RNA id: TU1952127


Basic Information

Item Value
RNA id TU1952127
length 281
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1704945
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8010148 ~ 8010428 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCGTTAAAGGTTAAATACCTGGCAAAGCTTCAGGTAAGTTTGGTGACCGTAAATTCGATAAAGTGAGCAGGAAAATGTAGTCTCAATTCGGTAAAATGAGCGAGGCAAGTTATTCTCCATTGAAATTGTGTTAAACTTCACGTGGGACGCTTTCATGTCTTCCATTCGCGGATGAGACTAAATCTgaggtaaatattttttttgctcaACTCAATAGACCTTAAGTCCAATGTCACATCACACGTTATGTCCGGTGTCAGTTTTGTTCCATTCTAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1951766 lncRNA upstream 21695 7988211 ~ 7988453 (+) True G1704683
TU1951756 lncRNA upstream 33431 7975766 ~ 7976717 (+) True G1704675
TU1951751 lncRNA upstream 38370 7971319 ~ 7971778 (+) True G1704671
TU1951705 lncRNA upstream 66574 7941952 ~ 7943574 (+) True yt6j
TU1951739 lncRNA upstream 81320 7928449 ~ 7928828 (+) True G1704659
TU1952128 lncRNA downstream 1196 8011624 ~ 8012083 (+) True G1704946
TU1952132 lncRNA downstream 7753 8018181 ~ 8018431 (+) True G1704950
TU1952143 lncRNA downstream 14595 8025023 ~ 8025554 (+) True G1704956
TU1952152 lncRNA downstream 51223 8061651 ~ 8062031 (+) True G1704965
TU1952153 lncRNA downstream 58768 8069196 ~ 8069459 (+) True G1704966
XM_036956762.1 mRNA upstream 680 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 2443 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 5723 8004291 ~ 8004425 (+) True LOC118943012
XM_036956483.1 mRNA upstream 66564 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 66564 7925016 ~ 7943584 (+) False yt6j
XM_036958455.1 mRNA downstream 118057 8128485 ~ 8132838 (+) True LOC118942992
XM_036956764.1 mRNA downstream 514528 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 544013 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 558962 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 597902 8608330 ~ 8669398 (+) True LOC110512606
TU1951729 other upstream 160028 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 352279 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 464304 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 464990 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 469498 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 528500 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 528500 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 533544 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 533544 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 839970 8850398 ~ 8851107 (+) True G1705229

Expression Profile