RNA id: TU1952129


Basic Information

Item Value
RNA id TU1952129
length 394
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1704947
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8011256 ~ 8011649 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacaccagatactgactggttttctgatcacaccagatactgactgggtttctgatccacaccagatactgactggttttctgatccacaccagatactgactggttttctgatccacaccagatactgactgggtttctgatccacaccagatactgactgggtttctgatccacaccagatactgactgtgtttctgatccacaccagatactgactggttttctgatccacaccagatactgactgggtttctgatccacaccagatactgactgggtttctgatccacaccagatactgactgtgtttctgatccacaccagatactgactggttttctgatccacaccagatactgactgggtttctgatccacaccagatactgactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952079 lncRNA downstream 1733 8004476 ~ 8009523 (-) False G1704909
TU1952078 lncRNA downstream 1733 8006213 ~ 8009523 (-) True G1704909
TU1952085 lncRNA downstream 4524 8003455 ~ 8006732 (-) False G1704909
TU1952081 lncRNA downstream 6276 8003455 ~ 8004980 (-) False G1704909
TU1952122 lncRNA downstream 23201 7987777 ~ 7988055 (-) True G1704940
TU1952131 lncRNA upstream 4969 8016618 ~ 8017608 (-) True G1704949
TU1952156 lncRNA upstream 13347 8024996 ~ 8025547 (-) False pthlha
TU1952158 lncRNA upstream 13998 8025647 ~ 8026207 (-) False pthlha
TU1952159 lncRNA upstream 14158 8025807 ~ 8026207 (-) False pthlha
TU1952168 lncRNA upstream 24125 8035774 ~ 8036162 (-) True G1704976
XM_036956748.1 mRNA downstream 8215 7945498 ~ 8003041 (-) False LOC110515713
XM_021595182.2 mRNA upstream 13325 8024974 ~ 8047015 (-) False pthlha
XM_036956763.1 mRNA upstream 13325 8024974 ~ 8047016 (-) False pthlha
XM_036958456.1 mRNA upstream 175685 8187334 ~ 8188387 (-) True LOC118942993
XM_036956771.1 mRNA upstream 794797 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 925494 8937143 ~ 8938405 (-) True LOC118942860
TU1952076 other downstream 8262 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 49016 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 243240 7657548 ~ 7768016 (-) True LOC118936572
TU1951902 other downstream 389415 7601802 ~ 7621841 (-) False LOC118936572
TU1951903 other downstream 409902 7588536 ~ 7601354 (-) False LOC118936572
TU1952160 other upstream 14640 8026289 ~ 8046882 (-) False pthlha
TU1952161 other upstream 14640 8026289 ~ 8045776 (-) True pthlha
TU1952844 other upstream 520086 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 520086 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 520086 8531735 ~ 8532803 (-) False G1705386

Expression Profile