RNA id: TU1952132


Basic Information

Item Value
RNA id TU1952132
length 251
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1704950
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8018181 ~ 8018431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGCCTGTCAGcccagatacagtatgttggttAACCTGTCTAACTCTTCACTGCTGTCTGCCTGTCAGcccagatacagtatgttggtCAACCTGCCTAACCCTCATTTGTATCCTAAGATTGTCTTGCACAAAATGTTTAAATGTTAGGTGTATTCCTGCTTGGTGAAAATATACTCAAATTGCAATGTATTTTGAAAACCGTGTGctagaccagggatcatcaactagattaaAACTTcaacaggatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952128 lncRNA upstream 6098 8011624 ~ 8012083 (+) True G1704946
TU1952127 lncRNA upstream 7753 8010148 ~ 8010428 (+) True G1704945
TU1951766 lncRNA upstream 29728 7988211 ~ 7988453 (+) True G1704683
TU1951756 lncRNA upstream 41464 7975766 ~ 7976717 (+) True G1704675
TU1951751 lncRNA upstream 46403 7971319 ~ 7971778 (+) True G1704671
TU1952143 lncRNA downstream 6592 8025023 ~ 8025554 (+) True G1704956
TU1952152 lncRNA downstream 43220 8061651 ~ 8062031 (+) True G1704965
TU1952153 lncRNA downstream 50765 8069196 ~ 8069459 (+) True G1704966
TU1952191 lncRNA downstream 81414 8099845 ~ 8100276 (+) True G1704996
TU1952229 lncRNA downstream 127824 8146255 ~ 8146467 (+) True G1705020
XM_036956762.1 mRNA upstream 8713 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 10476 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 13756 8004291 ~ 8004425 (+) True LOC118943012
XM_036956483.1 mRNA upstream 74597 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 74597 7925016 ~ 7943584 (+) False yt6j
XM_036958455.1 mRNA downstream 110054 8128485 ~ 8132838 (+) True LOC118942992
XM_036956764.1 mRNA downstream 506525 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 536010 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 550959 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 589899 8608330 ~ 8669398 (+) True LOC110512606
TU1951729 other upstream 168061 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 360312 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 472337 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 473023 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 477531 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 520497 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 520497 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 525541 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 525541 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 831967 8850398 ~ 8851107 (+) True G1705229

Expression Profile