RNA id: TU1952143


Basic Information

Item Value
RNA id TU1952143
length 532
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G1704956
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8025023 ~ 8025554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATAGGGTAGTCTCTCAGTGCAAGTGCCAAACAACGATATGAAGTTGTTGCATTGTGTTCAGGTTATGTACAGGCCGAGTGAACTTTGAACTTAGGACAGCATTCAGAAGCATAACAGGAGAAAGACAAGGTGGTTCCCAGTGGACCAACTGACGGAGGGGGGAGTTGAAGCACAATGTAcagaggttaggggtcaggggttgagGACAGCTGCGTGGGTCGTCCTGGGTCGTGTTCGTTAGGTATCGAACTGAAGAGAACCATCTGGAACGGGGAGGGGACTAGCTGGACTTTAGTCCAATTAGAAATGCTAATTTCTTGGATTTCctattttgtaaaacatttttaaacattttccaTAGTGTGCCTATTGAACACGCCCCTGGTCAACAGCCAACTAGATTAGACGTCTGTGGGCCAGTCAGAGCGGACAGACGAGTCATGTGATCACTATAGAACCGTGCAGAGAAGGAGCCTAGATAACACGGAGGAATGACCAACAATGTTTTCTTCATTTCAATCAACCACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952132 lncRNA upstream 6592 8018181 ~ 8018431 (+) True G1704950
TU1952128 lncRNA upstream 12940 8011624 ~ 8012083 (+) True G1704946
TU1952127 lncRNA upstream 14595 8010148 ~ 8010428 (+) True G1704945
TU1951766 lncRNA upstream 36570 7988211 ~ 7988453 (+) True G1704683
TU1951756 lncRNA upstream 48306 7975766 ~ 7976717 (+) True G1704675
TU1952152 lncRNA downstream 36097 8061651 ~ 8062031 (+) True G1704965
TU1952153 lncRNA downstream 43642 8069196 ~ 8069459 (+) True G1704966
TU1952191 lncRNA downstream 74291 8099845 ~ 8100276 (+) True G1704996
TU1952229 lncRNA downstream 120701 8146255 ~ 8146467 (+) True G1705020
TU1952232 lncRNA downstream 123897 8149451 ~ 8149669 (+) True G1705023
XM_036956762.1 mRNA upstream 15555 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 17318 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 20598 8004291 ~ 8004425 (+) True LOC118943012
XM_036956483.1 mRNA upstream 81439 7925016 ~ 7943584 (+) False yt6j
XM_036956485.1 mRNA upstream 81439 7925016 ~ 7943584 (+) False yt6j
XM_036958455.1 mRNA downstream 102931 8128485 ~ 8132838 (+) True LOC118942992
XM_036956764.1 mRNA downstream 499402 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 528887 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 543836 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 582776 8608330 ~ 8669398 (+) True LOC110512606
TU1951729 other upstream 174903 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 367154 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 479179 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 479865 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 484373 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 513374 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 513374 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 518418 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 518418 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 824844 8850398 ~ 8851107 (+) True G1705229

Expression Profile