RNA id: TU1952240


Basic Information

Item Value
RNA id TU1952240
length 557
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G1705031
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8163561 ~ 8164117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcCATATGGTGGACAGTGgtattaatccatatggtttatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatattaactggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattagtccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttattagtccatatggtggatagtgttattaatccatatggtggatagtgttattaatccatatggtggatagtgttgttaatccatatggtggatagtgttattaatccatattaactggtggatagtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952232 lncRNA upstream 13892 8149451 ~ 8149669 (+) True G1705023
TU1952229 lncRNA upstream 17094 8146255 ~ 8146467 (+) True G1705020
TU1952191 lncRNA upstream 63285 8099845 ~ 8100276 (+) True G1704996
TU1952153 lncRNA upstream 94102 8069196 ~ 8069459 (+) True G1704966
TU1952152 lncRNA upstream 101530 8061651 ~ 8062031 (+) True G1704965
TU1952243 lncRNA downstream 18788 8182905 ~ 8183281 (+) True G1705034
TU1952244 lncRNA downstream 21444 8185561 ~ 8185903 (+) True G1705035
TU1952253 lncRNA downstream 27611 8191728 ~ 8191984 (+) True G1705043
TU1952254 lncRNA downstream 29712 8193829 ~ 8238691 (+) False G1705044
TU1952259 lncRNA downstream 29712 8193829 ~ 8238691 (+) False G1705044
XM_036958455.1 mRNA upstream 30723 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 154093 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 155856 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 159136 8004291 ~ 8004425 (+) True LOC118943012
NM_001160647.1 mRNA upstream 219978 7925049 ~ 7943583 (+) False yt6j
XM_036956764.1 mRNA downstream 360839 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 390324 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 405273 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 444213 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 520802 8684919 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 313441 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 505692 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 617717 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 618403 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 622911 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 374811 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 374811 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 379855 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 379855 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 686281 8850398 ~ 8851107 (+) True G1705229

Expression Profile