RNA id: TU1952334


Basic Information

Item Value
RNA id TU1952334
length 322
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1705097
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8335684 ~ 8596863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctatatacagtagagaggctccatacagtagagaggctacatacagtagagaggctatatacagtagggaggctatatacagtagagaggttatatacagtagagaggctatatacagtagagaggctatatacagtagaggggctatatacagtagaggggctatatacagtagagaggctatatacagtagagaggctatatacagtagaggggctatatacagtagaggggctatatacagtagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952323 lncRNA upstream 26296 8308685 ~ 8309388 (+) True G1705087
TU1952319 lncRNA upstream 30206 8305030 ~ 8305478 (+) True G1705084
TU1952314 lncRNA upstream 31587 8303833 ~ 8304097 (+) True G1705080
TU1952254 lncRNA upstream 96993 8193829 ~ 8238691 (+) False G1705044
TU1952341 lncRNA downstream 12636 8350138 ~ 8352924 (+) False G1705098
TU1952343 lncRNA downstream 12636 8350138 ~ 8351040 (+) True G1705098
TU1952345 lncRNA downstream 17229 8354731 ~ 8355039 (+) True G1705099
TU1952361 lncRNA downstream 108008 8445510 ~ 8464423 (+) True G1705115
TU1952374 lncRNA downstream 142139 8479641 ~ 8482134 (+) True G1705121
XM_036958455.1 mRNA upstream 202846 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 326216 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 327979 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 331259 8004291 ~ 8004425 (+) True LOC118943012
NM_001160647.1 mRNA upstream 392101 7925049 ~ 7943583 (+) False yt6j
XM_036956764.1 mRNA downstream 187454 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 216939 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 231888 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 270828 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 347417 8684919 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 485564 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 677815 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 789840 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 790526 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 795034 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 201426 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 201426 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 206470 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 206470 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 512896 8850398 ~ 8851107 (+) True G1705229

Expression Profile