RNA id: TU1952803


Basic Information

Item Value
RNA id TU1952803
length 583
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1705357
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8445975 ~ 8463535 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagagagataatgagtaggttaccattggggatacagacagagataaggagtaggttaccatttggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagacagagacaaggagtaggttaccatttgggatacagacagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagacagagataaggagtaggttaccatttgggatacagacagagataaggagcaggttaccatttgggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccattggggatacagagagataaggagtaggttaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952808 lncRNA downstream 4572 8447143 ~ 8453296 (-) False G1705357
TU1952805 lncRNA downstream 9748 8445975 ~ 8448120 (-) False G1705357
TU1952332 lncRNA downstream 125841 8331662 ~ 8332027 (-) True G1705096
TU1952309 lncRNA downstream 171679 8285856 ~ 8286189 (-) True G1705075
TU1952291 lncRNA downstream 210344 8247292 ~ 8247524 (-) True G1705063
TU1952809 lncRNA upstream 52 8463587 ~ 8464900 (-) True G1705358
TU1952815 lncRNA upstream 3836 8467371 ~ 8469108 (-) True G1705362
TU1952818 lncRNA upstream 12910 8476445 ~ 8490193 (-) True G1705365
TU1952840 lncRNA upstream 57514 8521049 ~ 8521997 (-) True G1705383
TU1952907 lncRNA upstream 147796 8611331 ~ 8612367 (-) True G1705416
XM_036958456.1 mRNA downstream 269481 8187334 ~ 8188387 (-) True LOC118942993
XM_036956763.1 mRNA downstream 410852 8024974 ~ 8047016 (-) False pthlha
XM_021595182.2 mRNA downstream 410853 8024974 ~ 8047015 (-) False pthlha
XM_036956751.1 mRNA downstream 454827 7945498 ~ 8003041 (-) False LOC110515713
XM_036956771.1 mRNA upstream 342911 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 473608 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 527196 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 527233 8990768 ~ 8991221 (-) False LOC118942862
XR_005038490.1 mRNA upstream 621911 9085446 ~ 9088316 (-) False LOC118942861
TU1952160 other downstream 410986 8026289 ~ 8046882 (-) False pthlha
TU1952161 other downstream 412092 8026289 ~ 8045776 (-) True pthlha
TU1952076 other downstream 454874 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 495628 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 689852 7657548 ~ 7768016 (-) True LOC118936572
TU1952844 other upstream 68200 8531735 ~ 8532803 (-) False G1705386
TU1952845 other upstream 68200 8531735 ~ 8532803 (-) False G1705386
TU1952846 other upstream 68200 8531735 ~ 8532803 (-) False G1705386
TU1952847 other upstream 68200 8531735 ~ 8532803 (-) False G1705386
TU1952848 other upstream 68200 8531735 ~ 8532803 (-) False G1705386

Expression Profile