RNA id: TU1952374


Basic Information

Item Value
RNA id TU1952374
length 847
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1705121
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8479641 ~ 8482134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcatctcctcctcttcatctcctctactcctcctctcatctcctcatttAGTGGTTCCAccttgtctttctccactccagattctgaAGTCgtgtttctgtctttctccactccagattctgacatagtggttctgtctttctccactccagattctgacatagtggttctgtctttagtggttctgtctttctccactccagattatgacatagtggttctgtctttctccactccagattctgacatagtggttctgtctttctccactccagattctgacatagtggttctgtctttctccactccagattctgacatagtggttctgtatttagtggttctgtctttctccactccagattctgacatagtggttctgtctttcttcactccagattctgacatagtGGTTCTGTTTTTCTTCACTCCAGATTCCGACATTGttgttctgtctttctccactccagattctAACATActggttctgtctttctccactccagatACTTACATAGTGGTTCTGTCTttagtggttctgtctttctccactccagattctgacataCTGGTTCTGTCTTTCTTCACTCTAGATTCTGACATAGTGGTTCTGTCTttagtggttctgtctttctccactccagattctgaagtcgtggttctgtctttcttcactccagattctgacatagtggttctgtctttctccactccagattctTACATAGTGGTTCTGACATAGTGGTTCTGTCTTCctccactccagattctgacatagtggttctgtctttctccactccagattctgacataATGGTTCTGTCTttagtggttctgtctttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952361 lncRNA upstream 15218 8445510 ~ 8464423 (+) True G1705115
TU1952345 lncRNA upstream 124602 8354731 ~ 8355039 (+) True G1705099
TU1952341 lncRNA upstream 126717 8350138 ~ 8352924 (+) False G1705098
TU1952343 lncRNA upstream 128601 8350138 ~ 8351040 (+) True G1705098
TU1952334 lncRNA upstream 142139 8335684 ~ 8337502 (+) False G1705097
TU1952379 lncRNA downstream 22045 8504179 ~ 8504939 (+) True G1705125
TU1952381 lncRNA downstream 23112 8505246 ~ 8506429 (+) True G1705126
TU1952385 lncRNA downstream 32443 8514577 ~ 8515185 (+) False G1705129
TU1952386 lncRNA downstream 32443 8514577 ~ 8515185 (+) True G1705129
TU1952456 lncRNA downstream 63580 8545714 ~ 8547129 (+) True G1705142
XM_036958455.1 mRNA upstream 346803 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 470173 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 471936 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 475216 8004291 ~ 8004425 (+) True LOC118943012
NM_001160647.1 mRNA upstream 536058 7925049 ~ 7943583 (+) False yt6j
XM_036956764.1 mRNA downstream 42822 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 72307 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 87256 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 126196 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 202785 8684919 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 629521 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 821772 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 933797 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 934483 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 938991 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 56794 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 56794 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 61838 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 61838 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 368264 8850398 ~ 8851107 (+) True G1705229

Expression Profile