RNA id: TU1952379


Basic Information

Item Value
RNA id TU1952379
length 353
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1705125
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8504179 ~ 8504939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATAATACCATGGTTCTGCTCTGTAGCTGTATATAATACCATGGTTCTGCTCTGTAGCTGTATATAATACCATGGTTCTGATCTGTAGCTGTATATAACACCATGTctctgctctgtagctgtatATAACACCATGTctctgctctgtagctgtatataataccctggttctgctctgtagctgtatataataccacggctctgctctgtagctgtatATAATACCAtggttctgctctgtagctgtatataataccatggctctgctctgtagctgtatATAACACCATGTctctgctctgtagctgtatATAATACCATGTCAGAACACCTAAATGGAGAATGGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952374 lncRNA upstream 22045 8479641 ~ 8482134 (+) True G1705121
TU1952361 lncRNA upstream 39756 8445510 ~ 8464423 (+) True G1705115
TU1952345 lncRNA upstream 149140 8354731 ~ 8355039 (+) True G1705099
TU1952341 lncRNA upstream 151255 8350138 ~ 8352924 (+) False G1705098
TU1952343 lncRNA upstream 153139 8350138 ~ 8351040 (+) True G1705098
TU1952381 lncRNA downstream 307 8505246 ~ 8506429 (+) True G1705126
TU1952385 lncRNA downstream 9638 8514577 ~ 8515185 (+) False G1705129
TU1952386 lncRNA downstream 9638 8514577 ~ 8515185 (+) True G1705129
TU1952456 lncRNA downstream 40775 8545714 ~ 8547129 (+) True G1705142
TU1952461 lncRNA downstream 50834 8555773 ~ 8557530 (+) False G1705146
XM_036958455.1 mRNA upstream 371341 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 494711 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 496474 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 499754 8004291 ~ 8004425 (+) True LOC118943012
NM_001160647.1 mRNA upstream 560596 7925049 ~ 7943583 (+) False yt6j
XM_036956764.1 mRNA downstream 20017 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 49502 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 64451 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 103391 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 179980 8684919 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 654059 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 846310 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 958335 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 959021 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 963529 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 33989 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 33989 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 39033 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 39033 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 345459 8850398 ~ 8851107 (+) True G1705229

Expression Profile