RNA id: TU1952381


Basic Information

Item Value
RNA id TU1952381
length 363
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1705126
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8505246 ~ 8506429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtataaggtctgatatacccatggtataaggtctgatatacccatggtataaggtctgatatacccatggtataaggtctgatatacccatggtataaggtctgatatacccatggtataaggtctgatatacccatggtataaggtctgatatacctatggtataaggtctgatataccCCGGCTTCAGGGATCGAACTACCCGGTTATAATATGTTTCACTGTTGAAACCCAACAACAGTGTTGGAAGATGGAGAACTTTCTGTTTTCCTGCTGTGGGAAaatccttcctcttcctcacttCCTCATATTGACGTTGGAACAGACCTTTAGTATTTAGTCTTTGATGTTCAGTCTTATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952379 lncRNA upstream 307 8504179 ~ 8504939 (+) True G1705125
TU1952374 lncRNA upstream 23112 8479641 ~ 8482134 (+) True G1705121
TU1952361 lncRNA upstream 40823 8445510 ~ 8464423 (+) True G1705115
TU1952345 lncRNA upstream 150207 8354731 ~ 8355039 (+) True G1705099
TU1952341 lncRNA upstream 152322 8350138 ~ 8352924 (+) False G1705098
TU1952385 lncRNA downstream 8148 8514577 ~ 8515185 (+) False G1705129
TU1952386 lncRNA downstream 8148 8514577 ~ 8515185 (+) True G1705129
TU1952456 lncRNA downstream 39285 8545714 ~ 8547129 (+) True G1705142
TU1952461 lncRNA downstream 49344 8555773 ~ 8557530 (+) False G1705146
TU1952462 lncRNA downstream 49344 8555773 ~ 8556099 (+) False G1705146
XM_036958455.1 mRNA upstream 372408 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 495778 8003415 ~ 8009468 (+) False LOC118942853
XM_036956761.1 mRNA upstream 497541 8003435 ~ 8007705 (+) True LOC118942853
XR_005038749.1 mRNA upstream 500821 8004291 ~ 8004425 (+) True LOC118943012
NM_001160647.1 mRNA upstream 561663 7925049 ~ 7943583 (+) False yt6j
XM_036956764.1 mRNA downstream 18527 8524956 ~ 8532810 (+) True LOC118942854
XM_036958457.1 mRNA downstream 48012 8554441 ~ 8561481 (+) False LOC118942994
XM_036956765.1 mRNA downstream 62961 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 101901 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 178490 8684919 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 655126 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 847377 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 959402 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 960088 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 964596 7527934 ~ 7540650 (+) False LOC118942849
TU1952417 other downstream 32499 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other downstream 32499 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other downstream 37543 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other downstream 37543 8543972 ~ 8561212 (+) False LOC118942994
TU1952595 other downstream 343969 8850398 ~ 8851107 (+) True G1705229

Expression Profile