RNA id: TU1952846



Basic Information


Item Value
RNA id TU1952846
length 760
RNA type TUCP
GC content 0.53
exon number 2
gene id G1705386
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8531735 ~ 8532803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgttttttattttatttaaactaggcaagtcagttaagaacaaattcttatttacaatgacggcattcAGATACACAAACACAAGGCTCTCTGGCTCAGGATCAGGcctcccctgtccatgtaatcataTTCATTAGGTCTAAAAGGCTAAAACTGATCCAGGATCAGGcctcccctgtccatgtaatcataTTCATTAGGTCTAAAAGGCTAAaactgatccaggatcagctccCCCGTCCATGTAATCATATTCATTAGGTCTAAAAGGCTAAAACTGATCCAGGATCAGGCCCCGTCCATAAAATCATATTCATATATATGGAGCCTGGTCTGAATATGGAGCCTGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGAGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGAATGTGGGGCCCGGTCTGGCCTTGGCATGGGGCCAACAGAACATCCTCTTCTCATTCCATATCTGCCATGTCCACATCCCCCTGGGACACACCCCCTTTCTGGCGTCTGGCTGCCGCTGCCTTTGGTGCTGCCTTCTTTGGTGCTGCTGCCACCTTCGTCTTGTTTGTTGCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1952840 lncRNA downstream 9738 8521049 ~ 8521997 (-) True G1705383
TU1952818 lncRNA downstream 41542 8476445 ~ 8490193 (-) True G1705365
TU1952815 lncRNA downstream 62627 8467371 ~ 8469108 (-) True G1705362
TU1952809 lncRNA downstream 66835 8463587 ~ 8464900 (-) True G1705358
TU1952803 lncRNA downstream 68200 8457868 ~ 8463535 (-) True G1705357
TU1952907 lncRNA upstream 78528 8611331 ~ 8612367 (-) True G1705416
TU1952915 lncRNA upstream 91585 8624388 ~ 8625550 (-) False G1705422
TU1952916 lncRNA upstream 91585 8624388 ~ 8625848 (-) True G1705422
TU1952967 lncRNA upstream 164334 8697137 ~ 8699991 (-) True G1705454
TU1952986 lncRNA upstream 179714 8712517 ~ 8720911 (-) True G1705468
XM_036958456.1 mRNA downstream 343348 8187334 ~ 8188387 (-) True LOC118942993
XM_036956763.1 mRNA downstream 484719 8024974 ~ 8047016 (-) False pthlha
XM_021595182.2 mRNA downstream 484720 8024974 ~ 8047015 (-) False pthlha
XM_036956751.1 mRNA downstream 528694 7945498 ~ 8003041 (-) False LOC110515713
XM_036956771.1 mRNA upstream 273643 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 404340 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 457928 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 457965 8990768 ~ 8991221 (-) False LOC118942862
XR_005038490.1 mRNA upstream 552643 9085446 ~ 9088316 (-) False LOC118942861
TU1952160 other downstream 484853 8026289 ~ 8046882 (-) False pthlha
TU1952161 other downstream 485959 8026289 ~ 8045776 (-) True pthlha
TU1952076 other downstream 528741 7988701 ~ 8002994 (-) True LOC110515713
TU1952105 other downstream 569495 7941149 ~ 7962240 (-) True G1704927
TU1951911 other downstream 763719 7657548 ~ 7768016 (-) True LOC118936572
TU1953016 other upstream 274106 8806909 ~ 8808924 (-) True LOC118942856
TU1953186 other upstream 569615 9102418 ~ 9103155 (-) True LOC118942864
TU1953378 other upstream 741794 9274597 ~ 9277074 (-) True LOC118942865
TU1953431 other upstream 935820 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 1109147 9641950 ~ 9642941 (-) True G1705975

Expression Profile