RNA id: TU1952462


Basic Information

Item Value
RNA id TU1952462
length 237
lncRNA type intronic
GC content 0.36
exon number 2
gene id G1705146
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8555773 ~ 8557530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gggagaaacaacacacacacaacacacacacacacacactaacacacaataacacacaataccatgcaataccacacaataccatgcaataacacacaataccatgcaataacacacaataacacacaataacacacaataacacacaataacacgcaataacacacaataacacacaataacacacaataacacacaataacacacaataacacacaataccacacaataacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952456 lncRNA upstream 8644 8545714 ~ 8547129 (+) True G1705142
TU1952385 lncRNA upstream 40588 8514577 ~ 8515185 (+) False G1705129
TU1952386 lncRNA upstream 40588 8514577 ~ 8515185 (+) True G1705129
TU1952381 lncRNA upstream 49344 8505246 ~ 8506429 (+) True G1705126
TU1952379 lncRNA upstream 50834 8504179 ~ 8504939 (+) True G1705125
TU1952460 lncRNA downstream 432 8556531 ~ 8557530 (+) True G1705146
TU1952421 lncRNA downstream 5475 8561574 ~ 8564689 (+) False LOC118942994
TU1952424 lncRNA downstream 5475 8561574 ~ 8564689 (+) False LOC118942994
TU1952426 lncRNA downstream 5475 8561574 ~ 8564689 (+) False LOC118942994
TU1952428 lncRNA downstream 5475 8561574 ~ 8564689 (+) False LOC118942994
XM_036956764.1 mRNA upstream 22963 8524956 ~ 8532810 (+) True LOC118942854
XM_036958455.1 mRNA upstream 422935 8128485 ~ 8132838 (+) True LOC118942992
XM_036956762.1 mRNA upstream 546305 8003415 ~ 8009468 (+) False LOC118942853
XM_036956765.1 mRNA downstream 13291 8569390 ~ 8669398 (+) False LOC110512606
XM_036956766.1 mRNA downstream 52231 8608330 ~ 8669398 (+) True LOC110512606
XM_036956767.1 mRNA downstream 128820 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA downstream 128975 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA downstream 149051 8705150 ~ 8744465 (+) False LOC118936349
TU1951729 other upstream 705653 7849560 ~ 7850120 (+) True G1704651
TU1951624 other upstream 897904 7657429 ~ 7657869 (+) True G1704562
TU1951570 other upstream 1009929 7527934 ~ 7545844 (+) False LOC118942849
TU1951568 other upstream 1010615 7527934 ~ 7545158 (+) False LOC118942849
TU1951567 other upstream 1015123 7527934 ~ 7540650 (+) False LOC118942849
TU1952595 other downstream 294299 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 352417 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 352610 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 352610 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 406276 8962375 ~ 9035607 (+) False eps8a

Expression Profile