RNA id: TU1952986


Basic Information

Item Value
RNA id TU1952986
length 300
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G1705468
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8712517 ~ 8720911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgcagatcctctccagctcggtcaggttggatggggagcgtcgctgcacagctattttcaggtctctccagagatgttcgatcgggttcaagtccgggctctggctgggccactcaaggacattcagagacttgtctcgaagcaactcctgcattgtattgtggctctgtgcttagggtcgttgtcctgttggaaggtgaaccttcgccccagtctgaggtcctgaggtttctggagcaggttttcatcaaggatctctctgtactttactctgttcatctttccctcgatcctgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952967 lncRNA downstream 12526 8697137 ~ 8699991 (-) True G1705454
TU1952916 lncRNA downstream 86669 8624388 ~ 8625848 (-) True G1705422
TU1952915 lncRNA downstream 86967 8624388 ~ 8625550 (-) False G1705422
TU1952907 lncRNA downstream 100150 8611331 ~ 8612367 (-) True G1705416
TU1952840 lncRNA downstream 190520 8521049 ~ 8521997 (-) True G1705383
TU1953007 lncRNA upstream 68715 8789626 ~ 8792497 (-) False G1705484
TU1953008 lncRNA upstream 68715 8789626 ~ 8793132 (-) False G1705484
TU1953011 lncRNA upstream 68715 8789626 ~ 8792497 (-) True G1705484
TU1953013 lncRNA upstream 72730 8793641 ~ 8794263 (-) False G1705485
TU1953014 lncRNA upstream 72730 8793641 ~ 8794263 (-) True G1705485
XM_036958456.1 mRNA downstream 524130 8187334 ~ 8188387 (-) True LOC118942993
XM_036956763.1 mRNA downstream 665501 8024974 ~ 8047016 (-) False pthlha
XM_021595182.2 mRNA downstream 665502 8024974 ~ 8047015 (-) False pthlha
XM_036956751.1 mRNA downstream 709476 7945498 ~ 8003041 (-) False LOC110515713
XM_036956771.1 mRNA upstream 85535 8806446 ~ 8808961 (-) False LOC118942856
XM_036956778.1 mRNA upstream 216232 8937143 ~ 8938405 (-) True LOC118942860
XR_005038492.1 mRNA upstream 269820 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA upstream 269857 8990768 ~ 8991221 (-) False LOC118942862
XR_005038490.1 mRNA upstream 364535 9085446 ~ 9088316 (-) False LOC118942861
TU1952856 other downstream 179714 8531735 ~ 8532803 (-) False G1705386
TU1953016 other upstream 85998 8806909 ~ 8808924 (-) True LOC118942856
TU1953186 other upstream 381507 9102418 ~ 9103155 (-) True LOC118942864
TU1953378 other upstream 553686 9274597 ~ 9277074 (-) True LOC118942865
TU1953431 other upstream 747712 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 921039 9641950 ~ 9642941 (-) True G1705975

Expression Profile