RNA id: TU1952580


Basic Information

Item Value
RNA id TU1952580
length 318
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G1705217
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8796928 ~ 8797276 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACAGGAGTCAATGTTGTAGAGAggacactacaggagacagaatgttgtaGAGAGGACACTACAGGAGTCAATGTTGTAGAGAggacactacaggagacagaatgttgtagagAggacactacaggagacagaatgttgtagagaggacactacaggagacagaatgttgtagagaggacactacaggagacagaatgttgtagagaggacactacaggagacagaacgttgtagagaggacactacaggagacagaatgttgtagagaggacactacaggagacagaatgttgtaGAGAGGACACTACAGGAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952553 lncRNA upstream 15483 8780217 ~ 8781445 (+) True G1705211
TU1952548 lncRNA upstream 35089 8760475 ~ 8761839 (+) True G1705207
TU1952547 lncRNA upstream 35420 8760475 ~ 8761508 (+) False G1705207
TU1952543 lncRNA upstream 41300 8755150 ~ 8755628 (+) True G1705203
TU1952475 lncRNA upstream 52262 8741244 ~ 8744666 (+) True LOC118936349
TU1952572 lncRNA downstream 5787 8803063 ~ 8806801 (+) False G1705216
TU1952577 lncRNA downstream 7686 8804962 ~ 8807946 (+) True G1705216
TU1952593 lncRNA downstream 48239 8845515 ~ 8846064 (+) True G1705227
TU1952557 lncRNA downstream 75489 8872765 ~ 8873260 (+) True G1705214
TU1952643 lncRNA downstream 112716 8909992 ~ 8911381 (+) True G1705248
XM_036956770.1 mRNA upstream 5858 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 52463 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA upstream 52463 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA upstream 52463 8705150 ~ 8744465 (+) False LOC118936349
XM_036956765.1 mRNA upstream 127530 8569390 ~ 8669398 (+) False LOC110512606
XM_036956772.1 mRNA downstream 22333 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA downstream 67055 8864331 ~ 8869236 (+) True LOC118942858
XM_036956775.1 mRNA downstream 111010 8908286 ~ 9091490 (+) False eps8a
XR_005038493.1 mRNA downstream 227098 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 285520 9082796 ~ 9084558 (+) False LOC118942859
TU1952417 other upstream 235716 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other upstream 235716 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other upstream 235716 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other upstream 235716 8543972 ~ 8561212 (+) False LOC118942994
TU1951729 other upstream 946808 7849560 ~ 7850120 (+) True G1704651
TU1952595 other downstream 53122 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 111240 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 111433 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 111433 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 165099 8962375 ~ 9035607 (+) False eps8a

Expression Profile