RNA id: TU1952572


Basic Information

Item Value
RNA id TU1952572
length 3127
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G1705216
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8803063 ~ 8807946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTGTTTGTATTTTTCTTTAATGCATTTCTAAACAGTTTTACATATTAGAGGTTGTTTTGGGCTATTTAAAGAGTGTGGTGGGTGGAGGAGTTGACCGACTGATCTGTGGATATAGCAGCCTATAGCCTAATGTCGTCTGTCTGACAGGTAGAACTACCACCTCCTTCTTCAATAGGAAGgaataggctccaacacaaagccctcttgttgttagtgAGGTCTAATTAAAATGAAGACTGTTTACATGAATCTCTGATTTGCCTCCattcagcaccatgagctgtccatttctGATTGATTGCGTTGCTGTTTCAGATTTCAACACCACAATGTAAGTGACTAGAATTCGGTTTATTGTcaggtcaataactctgataaatacaTACATGGGCAAGAAACATATTGTGTTTTAATAATAATCTATTATAGTAGTAGCCagctatcaaagttgacctccggtcctccttctcttcttctaacGTTGCTCTGTGCTTCTCCCAGCATGCACTTCGTAGCCTAtaggatcatttgattgagaccacactgaATAGCctATAGGCGCAATTGATATTGTGCTCCCAGCAAAGAATGAGAGATGAGGGGCGACATCAGCACACAcatctatacagtatatatatatacatacatatacaacCTAATAAGCaactaaaaacaacaacaaaaacagacaTATTGACATTTCAATCACATGACCCTCCTCTGGACTaggtttgaaaatatatatataatcctcCCATTGGCTGAAATTGAAAAAGACCCGGCCCCATTGTCCTCCAGGTAACATTCTGAACATGTTGATCCTTTCCTTAGTTGTACCTTTTCTCTGTTTTACCATGGAGGACAGCAGGAGGCGGCCTATACAGTaacattcaggaagtattcagacccctggactttttacacattttgttacgtttcagccttattctaaaatggattacattgtttttttcccctcatcccccttcatcaatttacacacactagcccaaaattacaaagcaaaaacaggtcctTAAGATATTTTTtgcaaaatgtattaaaaataaaaactgaaataatcacctttacatcagtattcagaccctttactcaggactttgttgaagcacctttggcagcgattacagcctctagtcttcttggttatgacgctacaagcttggcacacctgtatttggggagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcgtcgctacacagatattttcaggtctctccagagatgtttgatcgggttcaagtccgggctctggatgggccactcatTCAGAaaattgtcccgaagccactcctgcgttgtcttggctgtgtgcttagggtcgttgtcctgttggaaggtgaaccttcgcccctgtctgaggtcctAAACGCTCTggcgcaggttttcatcaagggtctctctgtactttgctccaatcATCTTTCTCTCCTGACTATTCTCTCAGaatgtcgctgaaaaacatccccacagcatgatgctgccgccaccatgcttcaccgtagggatggtgccaccaccaccatgcttcaccgtagggatggtgtcaggtttcctccagacgtaacacttggcattcaggtcaaagagttcaatcttggtttcatcagaccaaagaatcttgtttctcgtggtcagagtccttttggtgcattttggcaaactccaagcaggctgccgtgccttttactgaggagtggcttccgtctggccactcataccataaaggcctgattggtggagtgctgcagagatggttgtccttctggaaggttctcctatctccacagaggaactctggagcgatcatcgggttcttggtcaactccctaaccacggcccttctcccccaattgctcagtttggccgggcggccagctctaggaagagtcttggtggctccaaacttcttccatttaagaatgatggaggccactgtgttcttggggaccttcaatgttgcagacatgttttggtacccttccccagatctgtgcctccacacaatcctgtcttggagctctatggacagttcctttgacctcatggcttggtttttgctctgacatccactgtcaactgtgggaccgtatatagacaggtgtgtgcctttccaaagacATGTCCAAAACatgtaatttaccacaggtggactccaagttggagaaacatctcaaagatgatcaattgaaacaggatgcacctgagctacatTTCAAGTCTCACACCAAAGCGTCTGAAATTTGAAAAATTAACAAACAAAAACCTTTTGtcacgttgtcattatggggtattgtgtgtagattgtagagaaaaatatataatttaatcaattttagaataaggctgtaatgtaacaaaatgtcagAATGAATGTCTATTAATGAGTGTCTATTAATGAGTGTCAAGCAGAATGAGTGTCTATTAATGAGTGTCAAGCAGAATGAATGTCTATTAATGAGTGTCAAGCAGAATGAATGTCTATTAATGAGTGTCTAGCAGAATGAGTGTCTATTAATGAGTGTCAAGCAGAATGAGTGTCTATTAATGAGTGTCAAGCAGAATGAATGTCTATTAATGAGTGTCAAGCAGAATGAATGTCTATTAATGAGTGTCTAGCAGAATGAATGTCTATTAATGAGTGTCTATTAATGAGTGTCAAGCAGAATTAATGTCTATTAATGAGTGTCAGACAGAATGAATGTCTATTAATGAGTCCTTATTTAATTTCCTTAGGACAATATAATCATAATTTGTAAACCAAAACAGGTACAGGCTACTATATTTTGGTTGCATTATGGTGAAAGAACATGAGTCGTCTAGGCCTCGATTAGATACCACATGATACAATGTAACATTACTGAAAGACAACATAGGTGGAGCAATGCCTCAGCAGCTCCTGTTCTGGTAAGGACGTGTCCCCATTCTAGCCTTTCACACAAACAAGAGACTTGAACATCTCTACAAAATGGGAAAGATCTTTCTGTTGTCTGTCAGACCTTCTATACGTTCTACAACATCACACTACAAAACCGGGGAAAAAAGGGCTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952580 lncRNA upstream 5787 8796928 ~ 8797276 (+) True G1705217
TU1952553 lncRNA upstream 21618 8780217 ~ 8781445 (+) True G1705211
TU1952548 lncRNA upstream 41224 8760475 ~ 8761839 (+) True G1705207
TU1952547 lncRNA upstream 41555 8760475 ~ 8761508 (+) False G1705207
TU1952543 lncRNA upstream 47435 8755150 ~ 8755628 (+) True G1705203
TU1952593 lncRNA downstream 38714 8845515 ~ 8846064 (+) True G1705227
TU1952557 lncRNA downstream 65964 8872765 ~ 8873260 (+) True G1705214
TU1952643 lncRNA downstream 103191 8909992 ~ 8911381 (+) True G1705248
TU1952662 lncRNA downstream 156123 8962924 ~ 8965174 (+) True G1705261
TU1952665 lncRNA downstream 157211 8964012 ~ 8971470 (+) False G1705263
XM_036956770.1 mRNA upstream 11993 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 58598 8684919 ~ 8744465 (+) False LOC118936349
XM_036956768.1 mRNA upstream 58598 8685074 ~ 8744465 (+) False LOC118936349
XM_036956769.1 mRNA upstream 58598 8705150 ~ 8744465 (+) False LOC118936349
XM_036956766.1 mRNA upstream 133665 8608330 ~ 8669398 (+) True LOC110512606
XM_036956772.1 mRNA downstream 12808 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA downstream 57530 8864331 ~ 8869236 (+) True LOC118942858
XM_036956775.1 mRNA downstream 101485 8908286 ~ 9091490 (+) False eps8a
XR_005038493.1 mRNA downstream 217573 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 275995 9082796 ~ 9084558 (+) False LOC118942859
TU1952417 other upstream 241851 8538928 ~ 8561212 (+) False LOC118942994
TU1952440 other upstream 241851 8538928 ~ 8561212 (+) False LOC118942994
TU1952427 other upstream 241851 8543972 ~ 8561212 (+) False LOC118942994
TU1952444 other upstream 241851 8543972 ~ 8561212 (+) False LOC118942994
TU1951729 other upstream 952943 7849560 ~ 7850120 (+) True G1704651
TU1952595 other downstream 43597 8850398 ~ 8851107 (+) True G1705229
TU1952618 other downstream 101715 8908516 ~ 9035607 (+) False eps8a
TU1952614 other downstream 101908 8908709 ~ 9035607 (+) False eps8a
TU1952621 other downstream 101908 8908709 ~ 9035607 (+) False eps8a
TU1952622 other downstream 155574 8962375 ~ 9035607 (+) False eps8a

Expression Profile