RNA id: TU1952662



Basic Information


Item Value
RNA id TU1952662
length 331
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1705261
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8962924 ~ 8965174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtaagatacatagtaactgtctgttcagggagaggtaagatacatagtaactgtgtgtaatgtttaattatacagggagaggaacacagaacagacaataagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1952643 lncRNA upstream 51543 8909992 ~ 8911381 (+) True G1705248
TU1952557 lncRNA upstream 89664 8872765 ~ 8873260 (+) True G1705214
TU1952593 lncRNA upstream 116860 8845515 ~ 8846064 (+) True G1705227
TU1952577 lncRNA upstream 154978 8804962 ~ 8807946 (+) True G1705216
TU1952572 lncRNA upstream 156123 8803063 ~ 8806801 (+) False G1705216
TU1952669 lncRNA downstream 974 8966148 ~ 8968201 (+) False G1705263
TU1952670 lncRNA downstream 974 8966148 ~ 8968973 (+) False G1705263
TU1952671 lncRNA downstream 974 8966148 ~ 8972856 (+) False G1705263
TU1952673 lncRNA downstream 974 8966148 ~ 8971470 (+) False G1705263
TU1952675 lncRNA downstream 974 8966148 ~ 8971830 (+) True G1705263
XM_036956772.1 mRNA upstream 64553 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 93688 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 171854 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 218459 8684919 ~ 8744465 (+) False LOC118936349
XR_005038493.1 mRNA downstream 59200 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 117622 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 117622 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 252051 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 252053 9217227 ~ 9241339 (+) True zgc:194209
TU1952595 other upstream 111817 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 401712 8538928 ~ 8561212 (+) False LOC118942994
TU1952681 other downstream 10130 8975304 ~ 8976565 (+) True G1705267
TU1952700 other downstream 46752 9011926 ~ 9013163 (+) True G1705279
TU1952615 other downstream 52151 9017325 ~ 9035607 (+) False eps8a
TU1952619 other downstream 62201 9027375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 95815 9060989 ~ 9075412 (+) False eps8a

Expression Profile