RNA id: TU1952678


Basic Information

Item Value
RNA id TU1952678
length 327
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1705264
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8966714 ~ 8968814 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagatacatagtaactgtctgttcagggagaggaacacataaCAGACaataagatacatagtaactgtctgttcagggagaggaacacagaacagacaataagatacatagtaactgtctgttcagggagaggtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtctgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggaacacagaacagacagtaagatacatagtaactgtgtgttcagggagaggtaagatacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952662 lncRNA upstream 1540 8962924 ~ 8965174 (+) True G1705261
TU1952643 lncRNA upstream 55333 8909992 ~ 8911381 (+) True G1705248
TU1952557 lncRNA upstream 93454 8872765 ~ 8873260 (+) True G1705214
TU1952593 lncRNA upstream 120650 8845515 ~ 8846064 (+) True G1705227
TU1952577 lncRNA upstream 158768 8804962 ~ 8807946 (+) True G1705216
TU1952680 lncRNA downstream 4918 8973732 ~ 8974086 (+) True G1705266
TU1952691 lncRNA downstream 26226 8995040 ~ 8996718 (+) False G1705274
TU1952694 lncRNA downstream 26226 8995040 ~ 8996718 (+) False G1705274
TU1952695 lncRNA downstream 26226 8995040 ~ 8996718 (+) True G1705274
TU1952696 lncRNA downstream 30641 8999455 ~ 9000860 (+) True G1705275
XM_036956772.1 mRNA upstream 68343 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 97478 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 175644 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 222249 8684919 ~ 8744465 (+) False LOC118936349
XR_005038493.1 mRNA downstream 55560 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 113982 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 113982 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 248411 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 248413 9217227 ~ 9241339 (+) True zgc:194209
TU1952595 other upstream 115607 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 405502 8538928 ~ 8561212 (+) False LOC118942994
TU1952681 other downstream 6490 8975304 ~ 8976565 (+) True G1705267
TU1952700 other downstream 43112 9011926 ~ 9013163 (+) True G1705279
TU1952615 other downstream 48511 9017325 ~ 9035607 (+) False eps8a
TU1952619 other downstream 58561 9027375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 92175 9060989 ~ 9075412 (+) False eps8a

Expression Profile