RNA id: TU1952680


Basic Information

Item Value
RNA id TU1952680
length 308
lncRNA type intronic
GC content 0.48
exon number 2
gene id G1705266
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8973732 ~ 8974086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGCCTCCTACTAGACAACATGATGGACATAGTTTGATTGGAGATtaagactgtgtcccaaatggcacagtattccaacagggccctggtctaaagtagtgcacttcgtagggaacagggtgccatagggccctggtctaaagcagtgcacttcgtagggaacagggtgccatttggggaCATATCTTGAAGCTCTGAGCCTCCAGGCGAGTACAGGACGACAGGGGAAGTTTTTGACAACAACCTGTTTACATTCAACTGCATGATGTGATGTTACTGAGGTATgctaatacagtacaatacagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952671 lncRNA upstream 876 8966148 ~ 8972856 (+) False G1705263
TU1952675 lncRNA upstream 1902 8966148 ~ 8971830 (+) True G1705263
TU1952665 lncRNA upstream 2262 8964012 ~ 8971470 (+) False G1705263
TU1952673 lncRNA upstream 2262 8966148 ~ 8971470 (+) False G1705263
TU1952670 lncRNA upstream 4759 8966148 ~ 8968973 (+) False G1705263
TU1952691 lncRNA downstream 20954 8995040 ~ 8996718 (+) False G1705274
TU1952694 lncRNA downstream 20954 8995040 ~ 8996718 (+) False G1705274
TU1952695 lncRNA downstream 20954 8995040 ~ 8996718 (+) True G1705274
TU1952696 lncRNA downstream 25369 8999455 ~ 9000860 (+) True G1705275
TU1952699 lncRNA downstream 34838 9008924 ~ 9009347 (+) True G1705278
XM_036956772.1 mRNA upstream 75361 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 104496 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 182662 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 229267 8684919 ~ 8744465 (+) False LOC118936349
XR_005038493.1 mRNA downstream 50288 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 108710 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 108710 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 243139 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 243141 9217227 ~ 9241339 (+) True zgc:194209
TU1952595 other upstream 122625 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 412520 8538928 ~ 8561212 (+) False LOC118942994
TU1952681 other downstream 1218 8975304 ~ 8976565 (+) True G1705267
TU1952700 other downstream 37840 9011926 ~ 9013163 (+) True G1705279
TU1952615 other downstream 43239 9017325 ~ 9035607 (+) False eps8a
TU1952619 other downstream 53289 9027375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 86903 9060989 ~ 9075412 (+) False eps8a

Expression Profile