RNA id: TU1952696


Basic Information

Item Value
RNA id TU1952696
length 319
lncRNA type intronic
GC content 0.39
exon number 3
gene id G1705275
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 8999455 ~ 9000860 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcttaatgagagtaaagatgggaggtgtagtcatgtcttaatgagagtaaagatgggaggtgtagtcatgtcttaatgactaaatatgggaggtgtagtcatgtcttaatgagagtaaagatgggaggtgtagacatgtcttaatgagagtaaagatgggaggtgtagtcatgtcttaatgagagtaaagatgggaggtgtagtcatgtcttaatgagagtaatgatgggaggtgtagtcatgtcttaatgactaaagatgggaggtgtagtcatgtcttaatgactaaagatgggtggtgtagtcatgtcttaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952691 lncRNA upstream 2737 8995040 ~ 8996718 (+) False G1705274
TU1952694 lncRNA upstream 2737 8995040 ~ 8996718 (+) False G1705274
TU1952695 lncRNA upstream 2737 8995040 ~ 8996718 (+) True G1705274
TU1952680 lncRNA upstream 25369 8973732 ~ 8974086 (+) True G1705266
TU1952671 lncRNA upstream 26599 8966148 ~ 8972856 (+) False G1705263
TU1952699 lncRNA downstream 8064 9008924 ~ 9009347 (+) True G1705278
TU1952709 lncRNA downstream 35330 9036190 ~ 9036407 (+) True G1705288
TU1952715 lncRNA downstream 45590 9046450 ~ 9046714 (+) True G1705293
TU1952717 lncRNA downstream 46437 9047297 ~ 9047704 (+) True G1705295
TU1952718 lncRNA downstream 47007 9047867 ~ 9048128 (+) True G1705296
XM_036956772.1 mRNA upstream 101084 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 130219 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 208385 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 254990 8684919 ~ 8744465 (+) False LOC118936349
XR_005038493.1 mRNA downstream 23514 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 81936 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 81936 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 216365 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 216367 9217227 ~ 9241339 (+) True zgc:194209
TU1952681 other upstream 22890 8975304 ~ 8976565 (+) True G1705267
TU1952595 other upstream 148348 8850398 ~ 8851107 (+) True G1705229
TU1952440 other upstream 438243 8538928 ~ 8561212 (+) False LOC118942994
TU1952700 other downstream 11066 9011926 ~ 9013163 (+) True G1705279
TU1952615 other downstream 16465 9017325 ~ 9035607 (+) False eps8a
TU1952619 other downstream 26515 9027375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 60129 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 64606 9065466 ~ 9075412 (+) False eps8a

Expression Profile