RNA id: TU1952700


Basic Information

Item Value
RNA id TU1952700
length 620
RNA type TUCP
GC content 0.45
exon number 2
gene id G1705279
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9011926 ~ 9013163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGCTGTTCCAATGTCCTCACAATGCCACAGAAGGCTGTTCCTATGTCCTCACAATGCCACATAAGGCTGTTCCTATGTCCTCACAATGCCACAGAAGGATACAGTATCAAATGGGTTCTGGAGTTGGCTTCATATCCAACAGATAATTAGTCTTGATGAGTCATTAGTGCTTTATATTGAGTCAGATCatatccctcctctcatctctccatcaccaTTCATTATCTATCCCTCTATCATCTCTCCATCACCTCACTCATTAtcactcctctccatctctccatcacctcACTCATTAtcactcctctccatctcttcatcaccTCACTCATTAtcactcctctccatctctccatcacctcACTCATTAtcactcctctccatctctccatcacctcACTCATTAtcactcctctccatctctcatctctccatctctcatctctccatctctccatctctcatctctccatctcttcatcaccTCACTCATTAtcactcctctccatctctccatctctcatctctccatctcttcatcaccTCACTCATTAtcactcctctccatctctccatcacctcACTCATTAtcactcctctccatctctccatctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952699 lncRNA upstream 2579 9008924 ~ 9009347 (+) True G1705278
TU1952696 lncRNA upstream 11066 8999455 ~ 9000860 (+) True G1705275
TU1952691 lncRNA upstream 15208 8995040 ~ 8996718 (+) False G1705274
TU1952694 lncRNA upstream 15208 8995040 ~ 8996718 (+) False G1705274
TU1952695 lncRNA upstream 15208 8995040 ~ 8996718 (+) True G1705274
TU1952709 lncRNA downstream 23027 9036190 ~ 9036407 (+) True G1705288
TU1952715 lncRNA downstream 33287 9046450 ~ 9046714 (+) True G1705293
TU1952717 lncRNA downstream 34134 9047297 ~ 9047704 (+) True G1705295
TU1952718 lncRNA downstream 34704 9047867 ~ 9048128 (+) True G1705296
TU1952720 lncRNA downstream 38229 9051392 ~ 9052293 (+) True G1705297
XM_036956772.1 mRNA upstream 113555 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 142690 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 220856 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 267461 8684919 ~ 8744465 (+) False LOC118936349
XR_005038493.1 mRNA downstream 11211 9024374 ~ 9027016 (+) True LOC118942863
XM_036956776.1 mRNA downstream 69633 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 69633 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 204062 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 204064 9217227 ~ 9241339 (+) True zgc:194209
TU1952681 other upstream 35361 8975304 ~ 8976565 (+) True G1705267
TU1952595 other upstream 160819 8850398 ~ 8851107 (+) True G1705229
TU1952417 other upstream 450714 8538928 ~ 8561212 (+) False LOC118942994
TU1952615 other downstream 4162 9017325 ~ 9035607 (+) False eps8a
TU1952619 other downstream 14212 9027375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 47826 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 52303 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 62329 9075492 ~ 9091405 (+) False eps8a

Expression Profile