RNA id: TU1952709


Basic Information

Item Value
RNA id TU1952709
length 218
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1705288
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9036190 ~ 9036407 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgttctaggggttcaaccaggtgatagttgagagatagagctgttctagagGTTCAACCAGGTGATGTAGTGacagatagagctgttctaggggttcaaccaggtgatagttgagagatagagctgttctaggggttcaaccaggtgatgtagtgagagatagagctgttctaggggttcaaccaggtgatagttgagagatagagctgttctaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952699 lncRNA upstream 26843 9008924 ~ 9009347 (+) True G1705278
TU1952696 lncRNA upstream 35330 8999455 ~ 9000860 (+) True G1705275
TU1952691 lncRNA upstream 39472 8995040 ~ 8996718 (+) False G1705274
TU1952694 lncRNA upstream 39472 8995040 ~ 8996718 (+) False G1705274
TU1952695 lncRNA upstream 39472 8995040 ~ 8996718 (+) True G1705274
TU1952715 lncRNA downstream 10043 9046450 ~ 9046714 (+) True G1705293
TU1952717 lncRNA downstream 10890 9047297 ~ 9047704 (+) True G1705295
TU1952718 lncRNA downstream 11460 9047867 ~ 9048128 (+) True G1705296
TU1952720 lncRNA downstream 14985 9051392 ~ 9052293 (+) True G1705297
TU1952639 lncRNA downstream 24582 9060989 ~ 9065017 (+) False eps8a
XR_005038493.1 mRNA upstream 9174 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 137819 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 166954 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 245120 8770887 ~ 8791070 (+) True LOC118942855
XM_036956767.1 mRNA upstream 291725 8684919 ~ 8744465 (+) False LOC118936349
XM_036956776.1 mRNA downstream 46389 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 46389 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 180818 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 180820 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 300474 9336881 ~ 9354472 (+) False LOC110507941
TU1952618 other upstream 583 8908516 ~ 9035607 (+) False eps8a
TU1952614 other upstream 583 8908709 ~ 9035607 (+) False eps8a
TU1952621 other upstream 583 8908709 ~ 9035607 (+) False eps8a
TU1952622 other upstream 583 8962375 ~ 9035607 (+) False eps8a
TU1952615 other upstream 583 9017325 ~ 9035607 (+) False eps8a
TU1952637 other downstream 24582 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 29059 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 39085 9075492 ~ 9091405 (+) False eps8a
TU1952627 other downstream 39085 9075492 ~ 9091405 (+) False eps8a
TU1952628 other downstream 39085 9075492 ~ 9091405 (+) False eps8a

Expression Profile