RNA id: TU1953158


Basic Information

Item Value
RNA id TU1953158
length 378
lncRNA type intronic
GC content 0.32
exon number 1
gene id G1705587
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9044619 ~ 9044996 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgttgtagtagatgtagttgttgttgttgttgttgtattagttgtagttgttgaagtagatgttgtagttgttgtagtagatgttgttgttgttgttgttgtagttgttgttgtattagttgtagttgttgtagtagatgttgttgttgttgttgttgtagttgttgttgtattagttgtagttgttgaagtagatgttgtagttgttgtagtagatgttgttgttgttgttgtagttgttgttgtattagttgtagttgttgtagtagatgttgttgttgttgttgttgttgtagttgttgttgtattagttgtagttgttgtagtagatgtagttgttgttgttgttgttgtattagttgtagttgttgtagttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953156 lncRNA downstream 559 9043284 ~ 9044060 (-) True G1705585
TU1953155 lncRNA downstream 1627 9042738 ~ 9042992 (-) True G1705584
TU1953152 lncRNA downstream 5333 9039060 ~ 9039286 (-) True G1705581
TU1953140 lncRNA downstream 24966 9017931 ~ 9019653 (-) True G1705569
TU1953120 lncRNA downstream 53403 8990530 ~ 8991216 (-) True LOC118942862
TU1953159 lncRNA upstream 1743 9046739 ~ 9047031 (-) True G1705588
TU1953160 lncRNA upstream 5656 9050652 ~ 9050859 (-) True G1705589
TU1953163 lncRNA upstream 7755 9052751 ~ 9053077 (-) True G1705591
TU1953164 lncRNA upstream 11283 9056279 ~ 9056643 (-) True G1705592
TU1953169 lncRNA upstream 24393 9069389 ~ 9075409 (-) False G1705595
XR_005038492.1 mRNA downstream 53398 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA downstream 53398 8990768 ~ 8991221 (-) False LOC118942862
XM_036956778.1 mRNA downstream 106214 8937143 ~ 8938405 (-) True LOC118942860
XM_036956771.1 mRNA downstream 235658 8806446 ~ 8808961 (-) False LOC118942856
XM_036958456.1 mRNA downstream 856232 8187334 ~ 8188387 (-) True LOC118942993
XR_005038490.1 mRNA upstream 40450 9085446 ~ 9088316 (-) False LOC118942861
XR_005038489.1 mRNA upstream 40450 9085446 ~ 9088322 (-) False LOC118942861
XR_005038488.1 mRNA upstream 40451 9085447 ~ 9088540 (-) False LOC118942861
XM_036956781.1 mRNA upstream 56831 9101827 ~ 9104616 (-) False LOC118942864
XM_036956782.1 mRNA upstream 56833 9101829 ~ 9104614 (-) False LOC118942864
TU1953016 other downstream 235695 8806909 ~ 8808924 (-) True LOC118942856
TU1952857 other downstream 511816 8531735 ~ 8532803 (-) False G1705386
TU1953186 other upstream 57422 9102418 ~ 9103155 (-) True LOC118942864
TU1953378 other upstream 229601 9274597 ~ 9277074 (-) True LOC118942865
TU1953431 other upstream 423627 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 596954 9641950 ~ 9642941 (-) True G1705975
TU1955083 other upstream 1315428 10360424 ~ 10360975 (-) True G1706990

Expression Profile