RNA id: TU1952720


Basic Information

Item Value
RNA id TU1952720
length 312
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1705297
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9051392 ~ 9052293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCACTATTAGGAGCTGTAGATCAGTAGTATGTTCTGTAGTAACAACAAGGATACACCACTATTAGGAGCTGTAGATCAGTAGTCTGTTCTGTAGTAACAACAAGGATACACCACTATTAGGAGCTGTAGATCAGTAGTCTGTAGATCAGTAGTATGTTCTGTAGTAACAACAAGGATACACCACTATTAGGAGCTGTAGATCAGTAGTCTGTTCTGTAGTAACAACAAGGATACACCACTATTAGGAGCCTTGGATCAGTAGTCTGTTCTGTAGTAACAACAAGGATACACCACTATTAGGAGTCTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952718 lncRNA upstream 3264 9047867 ~ 9048128 (+) True G1705296
TU1952717 lncRNA upstream 3688 9047297 ~ 9047704 (+) True G1705295
TU1952715 lncRNA upstream 4678 9046450 ~ 9046714 (+) True G1705293
TU1952709 lncRNA upstream 14985 9036190 ~ 9036407 (+) True G1705288
TU1952699 lncRNA upstream 42045 9008924 ~ 9009347 (+) True G1705278
TU1952639 lncRNA downstream 8696 9060989 ~ 9065017 (+) False eps8a
TU1952641 lncRNA downstream 13173 9065466 ~ 9075412 (+) False eps8a
TU1952728 lncRNA downstream 42420 9094713 ~ 9095086 (+) True G1705304
TU1952729 lncRNA downstream 43103 9095396 ~ 9095606 (+) True G1705305
TU1952735 lncRNA downstream 50141 9102434 ~ 9106488 (+) False G1705309
XR_005038493.1 mRNA upstream 24376 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 153021 8819609 ~ 8898371 (+) True LOC118942857
XM_036956774.1 mRNA upstream 182156 8864331 ~ 8869236 (+) True LOC118942858
XM_036956770.1 mRNA upstream 260322 8770887 ~ 8791070 (+) True LOC118942855
XM_036956769.1 mRNA upstream 306927 8705150 ~ 8744465 (+) False LOC118936349
XM_036956776.1 mRNA downstream 30503 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA downstream 30503 9082796 ~ 9084558 (+) True LOC118942859
XM_036956786.1 mRNA downstream 164932 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 164934 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 284588 9336881 ~ 9354472 (+) False LOC110507941
TU1952622 other upstream 15785 8962375 ~ 9035607 (+) False eps8a
TU1952637 other downstream 8696 9060989 ~ 9075412 (+) False eps8a
TU1952640 other downstream 13173 9065466 ~ 9075412 (+) False eps8a
TU1952626 other downstream 23199 9075492 ~ 9091405 (+) False eps8a
TU1952627 other downstream 23199 9075492 ~ 9091405 (+) False eps8a
TU1952628 other downstream 23199 9075492 ~ 9091405 (+) False eps8a

Expression Profile