RNA id: TU1953163



Basic Information


Item Value
RNA id TU1953163
length 327
lncRNA type intronic
GC content 0.46
exon number 1
gene id G1705591
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9052751 ~ 9053077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgctggagaTGCTGCTATAGTCGATCAGTGAAAAACACTAGGACTTTCCTTTACAACAGCAGTCGCTGCCAGGCTCAACAtcagctgtgttgttgttgttgctggagaTGCTGCTATAGTCGATCAGTGTAAAACACTAGGACTTTCCTTTACAACAGCAGTCGCTGCCAGGCTCAACATcagctgtgttgttgttgctggagATGCTGCTATAGTCGATCAGTGTAAAACACTAGGACTTTCCTTTACAACAGCAGTCGCTGCCAGGCTCAACATcagctgtgttgttgttgctggagATGCTGCTATAGTCGATCAGTGAAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1953160 lncRNA downstream 1892 9050652 ~ 9050859 (-) True G1705589
TU1953159 lncRNA downstream 5720 9046739 ~ 9047031 (-) True G1705588
TU1953158 lncRNA downstream 7755 9044619 ~ 9044996 (-) True G1705587
TU1953156 lncRNA downstream 8691 9043284 ~ 9044060 (-) True G1705585
TU1953155 lncRNA downstream 9759 9042738 ~ 9042992 (-) True G1705584
TU1953164 lncRNA upstream 3202 9056279 ~ 9056643 (-) True G1705592
TU1953169 lncRNA upstream 16312 9069389 ~ 9075409 (-) False G1705595
TU1953170 lncRNA upstream 20630 9073707 ~ 9075409 (-) True G1705595
TU1953173 lncRNA upstream 24994 9078071 ~ 9078978 (-) False G1705597
TU1953174 lncRNA upstream 25354 9078431 ~ 9078978 (-) True G1705597
XR_005038492.1 mRNA downstream 61530 8990731 ~ 8991221 (-) False LOC118942862
XR_005038491.1 mRNA downstream 61530 8990768 ~ 8991221 (-) False LOC118942862
XM_036956778.1 mRNA downstream 114346 8937143 ~ 8938405 (-) True LOC118942860
XM_036956771.1 mRNA downstream 243790 8806446 ~ 8808961 (-) False LOC118942856
XM_036958456.1 mRNA downstream 864364 8187334 ~ 8188387 (-) True LOC118942993
XR_005038490.1 mRNA upstream 32369 9085446 ~ 9088316 (-) False LOC118942861
XR_005038489.1 mRNA upstream 32369 9085446 ~ 9088322 (-) False LOC118942861
XR_005038488.1 mRNA upstream 32370 9085447 ~ 9088540 (-) False LOC118942861
XM_036956781.1 mRNA upstream 48750 9101827 ~ 9104616 (-) False LOC118942864
XM_036956782.1 mRNA upstream 48752 9101829 ~ 9104614 (-) False LOC118942864
TU1953016 other downstream 243827 8806909 ~ 8808924 (-) True LOC118942856
TU1952857 other downstream 519948 8531735 ~ 8532803 (-) False G1705386
TU1953186 other upstream 49341 9102418 ~ 9103155 (-) True LOC118942864
TU1953378 other upstream 221520 9274597 ~ 9277074 (-) True LOC118942865
TU1953431 other upstream 415546 9468623 ~ 9474354 (-) True LOC110515809
TU1953656 other upstream 588873 9641950 ~ 9642941 (-) True G1705975
TU1955083 other upstream 1307347 10360424 ~ 10360975 (-) True G1706990

Expression Profile