RNA id: TU1952728


Basic Information

Item Value
RNA id TU1952728
length 374
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1705304
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9094713 ~ 9095086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agcacctaatggtgttctggaagacaagcagtgagcacctaatggtgtctggaagacaagcagtgatcacctaatggtgttctggaagacaagcagtgaGCACCTAATGGTGTTCTGGAAGACAACCCATGATAGTTTAGATCTCCCCtaacaacccatgatagttgttgtatctttagatctcccctaacaacccatgatagttgttgtATCTTTAGATATCCCCtaacaacccatgatagttgttgtATCTTTAGATCTCCCATTTTTCTACATTTCTAATGGAAATTTCCATCTGTAATGTGGTTCCTTACCACGAACGGGccagcagcagtctaatggataTTTCCATCTGTAATGTGGTTCCTTACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952641 lncRNA upstream 19301 9065466 ~ 9075412 (+) False eps8a
TU1952639 lncRNA upstream 29696 9060989 ~ 9065017 (+) False eps8a
TU1952720 lncRNA upstream 42420 9051392 ~ 9052293 (+) True G1705297
TU1952718 lncRNA upstream 46585 9047867 ~ 9048128 (+) True G1705296
TU1952717 lncRNA upstream 47009 9047297 ~ 9047704 (+) True G1705295
TU1952729 lncRNA downstream 310 9095396 ~ 9095606 (+) True G1705305
TU1952735 lncRNA downstream 7348 9102434 ~ 9106488 (+) False G1705309
TU1952737 lncRNA downstream 7348 9102434 ~ 9104387 (+) False G1705309
TU1952738 lncRNA downstream 7348 9102434 ~ 9106488 (+) False G1705309
TU1952739 lncRNA downstream 7348 9102434 ~ 9106488 (+) True G1705309
XM_036956775.1 mRNA upstream 3223 8908286 ~ 9091490 (+) False eps8a
XM_036956776.1 mRNA upstream 10155 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 10155 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 67697 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 196342 8819609 ~ 8898371 (+) True LOC118942857
XM_036956786.1 mRNA downstream 122139 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 122141 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 241795 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 241795 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 241796 9336882 ~ 9354472 (+) False LOC110507941
TU1952626 other upstream 3308 9075492 ~ 9091405 (+) False eps8a
TU1952627 other upstream 3308 9075492 ~ 9091405 (+) False eps8a
TU1952628 other upstream 3308 9075492 ~ 9091405 (+) False eps8a
TU1952630 other upstream 3308 9075492 ~ 9091405 (+) False eps8a
TU1952632 other upstream 3308 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 560212 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 564245 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 653099 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 820627 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 1039302 10134388 ~ 10135384 (+) True G1706152

Expression Profile