RNA id: TU1952739


Basic Information

Item Value
RNA id TU1952739
length 2908
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G1705309
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9102434 ~ 9106488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagtaGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCTAGAATGAGTGGGTGgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAGTGTGTTgtacATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagtaGTTCCAGAATGAGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTTGTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAgtacatggagaaacagagttgTTCCAGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTGTGTTgtacatggagaaacagagttgTTCCTGAATGAgtacatggagaaacagagttgTTCCTGAATGAGTGTGTTGTACATGGAGAAACAGCGTAGTTCCTGAATGAGTACATGGAGAAACAGCGTAGTTCCTGTCATCaggaatatatatacagtgtgtcagaTGGAGAACTGCGTTAATAGAAGCCCTGTCATGTAACTAGTGATGCACATTTCTGATAACTTTCACAAAAGTCACagcttttccagaaatcctgtttgGAGGATTTCCAGATTTCCTTCTAATTACCTCCTGATTCCGGGAATCTTCCAACTTTTGGAACTCTAAACCCATGTAATTTAACCTATGTAATGTAAGGTCAATATGAGTTCAGGGTGGTTGACCCTTCACCTCTGTAAACACTTGGTGCTCCTCTAACTAAGGAGTGGTCAGACAGACggctggacagagacagatgagctggagacggacagatggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagatggacagagacagatgagctggacagagacagatgagatggacagagacagatgagctggacagagacagatgagctGGACGGAGACAGATGagctggacagagacagatgagctGGAGACGGACatatggacagagacagatgagctggacagagacagatgagctggagacggacagatggacagagacagatgagaTGGATAGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGACGGAGACAGAtgagatggacagagacagatgagctGGACGGAGACAGATGAGCTGGACGGAGACAGATGAGCTGGAGACGGAAGGCCAGTACAGTAGCCCTAACTCTTAACTCAGTAGCTGCTGCACCAACAATCAAGATCATGTAATGATCCCTTTTTTAGTAAACACTCAACTGTTCGATAATGTACCTCAATAATAATGTACCTTGATAATGCTGAGCCAGAGTgaggatttgatttgatatttgtcCAGTTATTCCATTTCCTTACTGTCCAGAGGTCCCATATAGATGGAGGTAAACTGGTCTTCACACCCTAGTGGAGGACCCCTCTCCCTGTGACATCAGAACTGTGCTGTCTGTAGGTCTGATGTCATCACCAGGAGACACAGGAAGTGCCTAATCTGATATGCACATTTACAACATGCACCGTTCAGGTCTCAACACTCGATTGCAACTAATGCAATTATATACCCTGGTAAACAAATGACAGTTTAAAACCTCCCCATCTTGTTGTTTCAGTAAAGAGGTTTCAATGACAGTTAAAAACCTCCCCATCTTCTAGAAAACATCCCTCTTGTTGTTTCAGTAAAGAGGTTTAAATGACAGTTTAAAACCTCCCCATCTTCAAGAAGACATCCCTCTTGTTTCAGTAAAGAGGTTTAAATGACAGTTAAAACCTCCCCATCGTGTTGTTTCAGTAAAAAGGTTTAAATGACAGTTAAAAACCTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952729 lncRNA upstream 6828 9095396 ~ 9095606 (+) True G1705305
TU1952728 lncRNA upstream 7348 9094713 ~ 9095086 (+) True G1705304
TU1952641 lncRNA upstream 27022 9065466 ~ 9075412 (+) False eps8a
TU1952639 lncRNA upstream 37417 9060989 ~ 9065017 (+) False eps8a
TU1952720 lncRNA upstream 50141 9051392 ~ 9052293 (+) True G1705297
TU1952761 lncRNA downstream 45682 9152170 ~ 9153074 (+) True G1705323
TU1952779 lncRNA downstream 94882 9201370 ~ 9202495 (+) True G1705340
TU1953265 lncRNA downstream 120149 9226637 ~ 9226973 (+) True G1705659
TU1953266 lncRNA downstream 123206 9229694 ~ 9231753 (+) True G1705660
TU1953271 lncRNA downstream 137271 9243759 ~ 9244263 (+) True G1705665
XM_036956775.1 mRNA upstream 10944 8908286 ~ 9091490 (+) False eps8a
XM_036956776.1 mRNA upstream 17876 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 17876 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 75418 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 204063 8819609 ~ 8898371 (+) True LOC118942857
XM_036956786.1 mRNA downstream 110737 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 110739 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 230393 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 230393 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 230394 9336882 ~ 9354472 (+) False LOC110507941
TU1952627 other upstream 11029 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 548810 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 552843 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 641697 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 809225 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 1027900 10134388 ~ 10135384 (+) True G1706152

Expression Profile