RNA id: TU1952761


Basic Information

Item Value
RNA id TU1952761
length 739
lncRNA type antisense_over
GC content 0.49
exon number 3
gene id G1705323
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9152170 ~ 9153074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attacagatgacagcagtgtactacaggacatagggaacagggtaccattacaGTCTGGCAGTGTACTACaggacatagggaacagggtaccattacagatgacagcagtgtactacaggacatagggaacagggtaccattacaGTCTGGCAGTGTACTACaggacatagggaacagggtaccattacagatgacagcagtgtactacaggacatagggaacagggtaccattacaGATGACAGAGCATCTCTTACCTTGAGGTCcttgttgatggtgttggtggGTTTACAGAGCACCTGGTAGAAGTCAACCACTCCCTCCCCGCTCCAGAGCAGGGTCACTGAGGAGTGGGTGGCGTTCACCGCGTACAGGGACCGCGGAGGGGCTGGCTCTGTCACAAACACAACAGGAGAAACGCCTGGGTCAACCTCCACAGACACAGGTAGACTGTGGTCGTCCCAGACTGTCTTGTCTACTGTTATCCTCTAGTCCACAGACACAGGTAGACTGTAGCTCTGTGGTCGTCCCAGACTGTCTTGTTTACTAGTTAGACCGAACTACTGAGGGATGTGGAAAAGAAggcaggctgtgtcacaaccccAGGTTCACTTCCTCAATCAGCGCTGTTATAAGCTGCTATTGTGACATCCAACATCcagtatacagtcgtggccaaaagttttgagaatgacacaaatataaattttcatgaagtctgcctcagtgtctttagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1952735 lncRNA upstream 45682 9102434 ~ 9106488 (+) False G1705309
TU1952738 lncRNA upstream 45682 9102434 ~ 9106488 (+) False G1705309
TU1952739 lncRNA upstream 45682 9102434 ~ 9106488 (+) True G1705309
TU1952737 lncRNA upstream 47783 9102434 ~ 9104387 (+) False G1705309
TU1952729 lncRNA upstream 56564 9095396 ~ 9095606 (+) True G1705305
TU1952779 lncRNA downstream 48296 9201370 ~ 9202495 (+) True G1705340
TU1953265 lncRNA downstream 73563 9226637 ~ 9226973 (+) True G1705659
TU1953266 lncRNA downstream 76620 9229694 ~ 9231753 (+) True G1705660
TU1953271 lncRNA downstream 90685 9243759 ~ 9244263 (+) True G1705665
TU1953272 lncRNA downstream 91509 9244583 ~ 9245096 (+) True G1705666
XM_036956775.1 mRNA upstream 60680 8908286 ~ 9091490 (+) False eps8a
XM_036956776.1 mRNA upstream 67612 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 67612 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 125154 9024374 ~ 9027016 (+) True LOC118942863
XM_036956772.1 mRNA upstream 253799 8819609 ~ 8898371 (+) True LOC118942857
XM_036956786.1 mRNA downstream 64151 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA downstream 64153 9217227 ~ 9241339 (+) True zgc:194209
XM_036956789.1 mRNA downstream 183807 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 183807 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 183808 9336882 ~ 9354472 (+) False LOC110507941
TU1952627 other upstream 60765 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 502224 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 506257 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 595111 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 762639 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 981314 10134388 ~ 10135384 (+) True G1706152

Expression Profile