RNA id: TU1953254


Basic Information

Item Value
RNA id TU1953254
length 772
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G1705648
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9253206 ~ 9254111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcatatgtggttccacagtgcactgattggccaggagactgttaaactgaatatgtattcagttagttcatatgtggttccacagtgcctCCTCAGACCCATACAGGGGCCAGATGCTGTTGTAGGGGTCTGTCTAACCCAGCtgtagttagtagtggtcagtGTCTCCTCAGACCCATACAGGGGCCAGAATCTGTTGTAACTAGCCATGCTGTTGGTAGGGTCTGTCTAACCCAGCtgtagttagtagtggtcagtGTCTCCTCAGACCCATACAGGGGAAGGAATGTTTTTAATgatcataacatggttatatctTGCCGTAACTAATCTGAAAGACAATTTAACATCAATAATATCACAATGTTACTGTTCTGTGGACTCATAAAGCATCTCTGTAATACTGTTCTGTGGACTCAAAGCATCTCTGTAATACTGTTCTGTGGACTCATAAAGCATCTCTGTAATACTGTTCTGTGGACTCAAAGCATCTCTGTAATACTGTTCTGTGGACTCATAAATCATCTCTGTAATACTGTTCTGTGGACTCAAAGCATCTCTGTAATAGTCTGTAATACTGTTCTGTGGACTCAAAGCATCTCTGTAATACTGTTCTGTGGACTCATAAAGCATCTCTGTAATACTGTTCTGTGGACTCATAAAGCATCTCTGTAATAGTCTAATACTGTTCTGTGGACTCATAAATCATCTCTGTAATACTGTTCTGTGGACTCATAAATCATCTCTGTAATAGTCTGTAATACTGTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953272 lncRNA upstream 8110 9244583 ~ 9245096 (+) True G1705666
TU1953271 lncRNA upstream 8943 9243759 ~ 9244263 (+) True G1705665
TU1953266 lncRNA upstream 21453 9229694 ~ 9231753 (+) True G1705660
TU1953265 lncRNA upstream 26233 9226637 ~ 9226973 (+) True G1705659
TU1952779 lncRNA upstream 50711 9201370 ~ 9202495 (+) True G1705340
TU1953255 lncRNA downstream 2118 9256229 ~ 9257527 (+) True G1705649
TU1953251 lncRNA downstream 5885 9259996 ~ 9260273 (+) True G1705646
TU1953273 lncRNA downstream 9801 9263912 ~ 9264241 (+) True G1705667
TU1953276 lncRNA downstream 15517 9269628 ~ 9270386 (+) False G1705669
TU1953277 lncRNA downstream 15517 9269628 ~ 9270386 (+) False G1705669
XM_036956786.1 mRNA upstream 11867 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA upstream 11867 9217227 ~ 9241339 (+) True zgc:194209
XM_036956776.1 mRNA upstream 168648 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 168648 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 226190 9024374 ~ 9027016 (+) True LOC118942863
XM_036956789.1 mRNA downstream 82770 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 82770 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 82771 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA downstream 82771 9336882 ~ 9354472 (+) True LOC110507941
XM_036958472.1 mRNA downstream 133606 9387717 ~ 9391042 (+) False LOC118943004
TU1952627 other upstream 161801 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 401187 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 405220 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 494074 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 661602 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 880277 10134388 ~ 10135384 (+) True G1706152

Expression Profile