RNA id: TU1953255


Basic Information

Item Value
RNA id TU1953255
length 1299
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1705649
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9256229 ~ 9257527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaccatcttacatataaaaccctatttgttcattgaaaatgGTGAATAGATCACCACATAttaatgttgggttgtattggagagtctcagtcttaaatcattttccacacacagtctgtgtctatttagttttcatgctaatgagggccgagaatccactctctcacataggtacagtggggcaaaacatttaatacaggtaacgaatggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaatacatttattaaaaatcctacaatgtgattttctggattttcagAAGagaatgtcttccttaattgaccccccataaacgtaacggacaaataccaggagctgtgtcaggccctccacgtctgttgactcatccagctgtaacagacatataccaggagctgtgccaggcccaccacgtctgttgactcatccagctgtaacagacatataccaggagctgtaccaggccacgtctgttgactcatccagctgtaacagacatataccaggagctgtaccaggcctgttgactcatccagctgtaacagacatataccaggagctgtaccaggccacgtctgttgactcatccagctgtaacagacatataccaggagctgtaccaggccacgtctgttgactcatccagctgtaacagacatataccaggagctgtaccaggcctgttgactcatccagctgtaacagacatataccaggagctgtaccaggccacgtctgttgactcatccagctgtaacagacatataccaggagctgtaccaggcctgttgactcatccagctgtaacagacatataccaggagctgtgccaggcccgcctcgtctgttgactcatccagctgtaacagacatataccaggagctgtgccaggccctccaCGTCTGGTGACTCATCCAgttgtaacagacatataccaggagctgtgccaggcccgcctcgtctgttgactcatccagttgtaacgcatataattcactggcttgtatgtgaagcagtaattgtttcaaaacatctcctgccatgtcactgatgcgtcgggaaacagtgttgtttgatggagccattgtctgtatagttttttggggccttttcccccagcattgtcccagccaacaggaagaatgaagtcctccacaatagtatggtgcttgcctgtcctagccactcctccacaatagtatggggcttgcctgtccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953254 lncRNA upstream 2118 9253206 ~ 9254111 (+) True G1705648
TU1953272 lncRNA upstream 11133 9244583 ~ 9245096 (+) True G1705666
TU1953271 lncRNA upstream 11966 9243759 ~ 9244263 (+) True G1705665
TU1953266 lncRNA upstream 24476 9229694 ~ 9231753 (+) True G1705660
TU1953265 lncRNA upstream 29256 9226637 ~ 9226973 (+) True G1705659
TU1953251 lncRNA downstream 2469 9259996 ~ 9260273 (+) True G1705646
TU1953273 lncRNA downstream 6385 9263912 ~ 9264241 (+) True G1705667
TU1953276 lncRNA downstream 12101 9269628 ~ 9270386 (+) False G1705669
TU1953277 lncRNA downstream 12101 9269628 ~ 9270386 (+) False G1705669
TU1953278 lncRNA downstream 12101 9269628 ~ 9270386 (+) True G1705669
XM_036956786.1 mRNA upstream 14890 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA upstream 14890 9217227 ~ 9241339 (+) True zgc:194209
XM_036956776.1 mRNA upstream 171671 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 171671 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 229213 9024374 ~ 9027016 (+) True LOC118942863
XM_036956789.1 mRNA downstream 79354 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 79354 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 79355 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA downstream 79355 9336882 ~ 9354472 (+) True LOC110507941
XM_036958472.1 mRNA downstream 130190 9387717 ~ 9391042 (+) False LOC118943004
TU1952627 other upstream 164824 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 397771 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 401804 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 490658 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 658186 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 876861 10134388 ~ 10135384 (+) True G1706152

Expression Profile