RNA id: TU1953280


Basic Information

Item Value
RNA id TU1953280
length 427
lncRNA type antisense_over
GC content 0.53
exon number 2
gene id G1705671
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9274554 ~ 9275993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTGAGGTACTTCCCAGCGAAGAAGGTCTGGTAGCCAGCATAGGCCTGCAGTAGAGCAGGGAAGGTCTTGGGCTCCTGGGTCTTCTGCCAGGCCGTGCTGCTGCAGTTCCCCTCCAGAGTGTTGTTGATCACATGGTGGTTATGAGGATACTTTCCTGTTAGGATGCTGGCTCTGCTGGGACAGCACAGTGGGCTGGCTACAAACTGggataaacacaacaacatactCCCATCAGCATGTCTCCTGGTGCAGTGACACTACACTCATTCATCTCCCATCCTGCCCCTGAAACCCTCATCATGCATTCATCTCCCATCCTGCCCCTGAAACCCTCATCATGCATTAATCTCCCATCCTGCCCCTGAAACCCTCATCATGCATTTATCTCCTCCAGAAGGAACCTGCAGGTAAGCATTTGGTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953279 lncRNA upstream 3664 9270460 ~ 9270890 (+) True G1705670
TU1953276 lncRNA upstream 4168 9269628 ~ 9270386 (+) False G1705669
TU1953277 lncRNA upstream 4168 9269628 ~ 9270386 (+) False G1705669
TU1953278 lncRNA upstream 4168 9269628 ~ 9270386 (+) True G1705669
TU1953273 lncRNA upstream 10313 9263912 ~ 9264241 (+) True G1705667
TU1953239 lncRNA downstream 23946 9299002 ~ 9319825 (+) False G1705645
TU1953241 lncRNA downstream 23946 9299002 ~ 9325462 (+) False G1705645
TU1953242 lncRNA downstream 23946 9299002 ~ 9326396 (+) False G1705645
TU1953245 lncRNA downstream 23946 9299002 ~ 9315015 (+) False G1705645
TU1953246 lncRNA downstream 23946 9299002 ~ 9309775 (+) False G1705645
XM_036956786.1 mRNA upstream 33215 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA upstream 33215 9217227 ~ 9241339 (+) True zgc:194209
XM_036956776.1 mRNA upstream 189996 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 189996 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 247538 9024374 ~ 9027016 (+) True LOC118942863
XM_036956789.1 mRNA downstream 61825 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 61825 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 61826 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA downstream 61826 9336882 ~ 9354472 (+) True LOC110507941
XM_036958472.1 mRNA downstream 112661 9387717 ~ 9391042 (+) False LOC118943004
TU1952627 other upstream 183149 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 380242 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 384275 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 473129 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 640657 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 859332 10134388 ~ 10135384 (+) True G1706152

Expression Profile