RNA id: TU1953242


Basic Information

Item Value
RNA id TU1953242
length 1216
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G1705645
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9299002 ~ 9333138 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtgataatataatagagacattagatctagctggtctgtcacaatataatagagacagtagatctagcaggtctgtcataatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgtaatagagacagtagatctagctggtctgtcataatgtaacaaagatagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatataaatagagacagtagatctagctggtctgtcataatgtaatagagacagtagatctaactggtctgtcataatataacaaagacagtagatctagctggtctgtcataatgtaatagagacagtagatctagctggtctgtcatagtacaatagagacagtagatctagctggtctgtcatattataatagtgacactagacatagctggtctgccataatataatagagacagtagatctagcaggtctgtcataatataatagaggcagtagatctagcaggtctgtcattatataatagagacagtagatctatctggtcggtcataatataaatgacacagtagatctagctggtctgtcaaaatgaaatagagacagtagatctagctggtctgtcataatgtaaaaaagacagtagatctagcaggtctgtcataatataatagagacagtagaaatagctggtctgtcataatacaatagagacatagagacagtagatctagctggtctgtcataatataatagagacagtaggtctagctggtctgacataatttaaatagagacagtagatctagctggtctgtcataatgtaatagaggcagtagatctagctggtctgtcataatgtaatagagacagtagatcttacttccggcgccgacagagatggccgcctcgcttcgtgttcctaggaaactatgcagttttttgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953281 lncRNA upstream 23009 9274554 ~ 9275993 (+) True G1705671
TU1953280 lncRNA upstream 23946 9274554 ~ 9275056 (+) False G1705671
TU1953279 lncRNA upstream 28112 9270460 ~ 9270890 (+) True G1705670
TU1953277 lncRNA upstream 28616 9269628 ~ 9270386 (+) False G1705669
TU1953248 lncRNA downstream 4655 9331051 ~ 9333138 (+) True G1705645
TU1953322 lncRNA downstream 64439 9390835 ~ 9391585 (+) False LOC118943004
TU1953323 lncRNA downstream 64439 9390835 ~ 9391585 (+) True LOC118943004
TU1953348 lncRNA downstream 142917 9469313 ~ 9471313 (+) True G1705728
TU1953531 lncRNA downstream 195663 9522059 ~ 9529433 (+) True G1705863
XM_036956786.1 mRNA upstream 57663 9217225 ~ 9241339 (+) False zgc:194209
XM_036956785.1 mRNA upstream 57663 9217227 ~ 9241339 (+) True zgc:194209
XM_036956776.1 mRNA upstream 214444 9082796 ~ 9084558 (+) False LOC118942859
XM_036956777.1 mRNA upstream 214444 9082796 ~ 9084558 (+) True LOC118942859
XR_005038493.1 mRNA upstream 271986 9024374 ~ 9027016 (+) True LOC118942863
XM_036956789.1 mRNA downstream 10485 9336881 ~ 9354472 (+) False LOC110507941
XM_036956790.1 mRNA downstream 10485 9336881 ~ 9354472 (+) False LOC110507941
XM_036956791.1 mRNA downstream 10486 9336882 ~ 9354472 (+) False LOC110507941
XM_036956792.1 mRNA downstream 10486 9336882 ~ 9354472 (+) True LOC110507941
XM_036958472.1 mRNA downstream 61321 9387717 ~ 9391042 (+) False LOC118943004
TU1952627 other upstream 207597 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 328902 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 332935 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 421789 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 589317 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 807992 10134388 ~ 10135384 (+) True G1706152

Expression Profile