RNA id: TU1953348


Basic Information

Item Value
RNA id TU1953348
length 603
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1705728
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9469313 ~ 9471313 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcagaattaggtggtaacataggtaagatgttttatattcatcatatgtttgtaagttacttctcatcagaatgttatttttgtataatactgtggcggggttgcagtatctgttctatgtcaggactaagttgcttgggccgcagagaggggagaggtcaaggtgtcatcatgtgtaaacatatcttttgctccactgtgtctgtgtgccagtcactccctacttttcccatcggggagaggaggatggcagtgtctggaatcattctatgctccctctttTGTTGCTCctatcttaacctatagcctcactctcctctccgtgagtttgtccaggattggttgtatttagaattggttgtatctaaatgacaatttgatatatatcatagggtgggggtaatgtcttggtaccattttgtaccaaggacaaaataagagctttgtttaggagaccaaactgaacgataatttatagccaactcTGTCTGGCTAGGGGATACTCCTCTCTGAAGTAGAGTATtttctttgtgtaagttcctaagacctgtggtttgtcatgtcgtctagggggggtggatctttgctataaaggatccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953322 lncRNA upstream 77728 9390835 ~ 9391585 (+) False LOC118943004
TU1953323 lncRNA upstream 77728 9390835 ~ 9391585 (+) True LOC118943004
TU1953249 lncRNA upstream 136175 9303748 ~ 9333138 (+) False G1705645
TU1953248 lncRNA upstream 136175 9331051 ~ 9333138 (+) True G1705645
TU1953247 lncRNA upstream 142917 9303748 ~ 9326396 (+) False G1705645
TU1953531 lncRNA downstream 50746 9522059 ~ 9529433 (+) True G1705863
TU1953547 lncRNA downstream 65488 9536801 ~ 9537651 (+) True G1705879
TU1953548 lncRNA downstream 67936 9539249 ~ 9539450 (+) True G1705880
TU1953554 lncRNA downstream 76906 9548219 ~ 9548667 (+) True G1705884
TU1953555 lncRNA downstream 77545 9548858 ~ 9549064 (+) True G1705885
XM_036956795.1 mRNA upstream 56142 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 56142 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 56142 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 78271 9387717 ~ 9391042 (+) False LOC118943004
XM_036956789.1 mRNA upstream 114841 9336881 ~ 9354472 (+) False LOC110507941
XM_036956805.1 mRNA downstream 60791 9532104 ~ 9722986 (+) True LOC118942866
XR_005038495.1 mRNA downstream 298277 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 353537 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 397089 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 509482 9980795 ~ 9981137 (+) True LOC118942870
TU1952627 other upstream 377908 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 183985 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 188018 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 276872 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 444400 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 663075 10134388 ~ 10135384 (+) True G1706152

Expression Profile