RNA id: TU1953531


Basic Information

Item Value
RNA id TU1953531
length 271
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1705863
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9522059 ~ 9529433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTAtatatttgtcatgtattgtcatattatgtcttgttcctgttctttctcttcaccctgtctccctctgctggtcgtattaggttaccttctcttcccctccttcccccagctgttccttattttctctaactacctcgttcacccttttcccacctgttcccttttttccctctgattaggtctctatttctctctctgttcctgcttctgtctttgtcagattctcgtttgagtttctcatgccagaaccaaactatcgtcttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953348 lncRNA upstream 50746 9469313 ~ 9471313 (+) True G1705728
TU1953322 lncRNA upstream 130474 9390835 ~ 9391585 (+) False LOC118943004
TU1953323 lncRNA upstream 130474 9390835 ~ 9391585 (+) True LOC118943004
TU1953249 lncRNA upstream 188921 9303748 ~ 9333138 (+) False G1705645
TU1953547 lncRNA downstream 7368 9536801 ~ 9537651 (+) True G1705879
TU1953548 lncRNA downstream 9816 9539249 ~ 9539450 (+) True G1705880
TU1953554 lncRNA downstream 18786 9548219 ~ 9548667 (+) True G1705884
TU1953555 lncRNA downstream 19425 9548858 ~ 9549064 (+) True G1705885
TU1953556 lncRNA downstream 21114 9550547 ~ 9550791 (+) True G1705886
XM_036956795.1 mRNA upstream 108888 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 108888 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 108888 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 131017 9387717 ~ 9391042 (+) False LOC118943004
XM_036956792.1 mRNA upstream 167587 9336882 ~ 9354472 (+) True LOC110507941
XM_036956805.1 mRNA downstream 2671 9532104 ~ 9722986 (+) True LOC118942866
XR_005038495.1 mRNA downstream 240157 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 295417 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 338969 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 451362 9980795 ~ 9981137 (+) True LOC118942870
TU1952627 other upstream 430654 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 125865 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 129898 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 218752 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 386280 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 604955 10134388 ~ 10135384 (+) True G1706152

Expression Profile