RNA id: TU1953555


Basic Information

Item Value
RNA id TU1953555
length 207
lncRNA type intronic
GC content 0.37
exon number 1
gene id G1705885
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9548858 ~ 9549064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCGACAGTCTAATGTCTCTGACGTTTTTAAAGTcacgttattttttattttttattaagtccattgttttgtttttattaactgatttaactgacttgcctagttcaacaaaatacattttatacacTCCATCTCTGGCTCTAAGAGGTCACACAGTGTacaagtagagagacagagggagaaggagagagggagaagcagagagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953554 lncRNA upstream 191 9548219 ~ 9548667 (+) True G1705884
TU1953548 lncRNA upstream 9408 9539249 ~ 9539450 (+) True G1705880
TU1953547 lncRNA upstream 11207 9536801 ~ 9537651 (+) True G1705879
TU1953531 lncRNA upstream 19425 9522059 ~ 9529433 (+) True G1705863
TU1953348 lncRNA upstream 77545 9469313 ~ 9471313 (+) True G1705728
TU1953556 lncRNA downstream 1483 9550547 ~ 9550791 (+) True G1705886
TU1953559 lncRNA downstream 13562 9562626 ~ 9562846 (+) True G1705889
TU1953562 lncRNA downstream 17540 9566604 ~ 9566829 (+) True G1705892
TU1953563 lncRNA downstream 18767 9567831 ~ 9568124 (+) True G1705893
TU1953566 lncRNA downstream 31355 9580419 ~ 9580681 (+) True G1705896
XM_036956795.1 mRNA upstream 135687 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 135687 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 135687 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 157816 9387717 ~ 9391042 (+) False LOC118943004
XM_036956792.1 mRNA upstream 194386 9336882 ~ 9354472 (+) True LOC110507941
XR_005038495.1 mRNA downstream 220526 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 275786 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 319338 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 431731 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 521412 10070476 ~ 10098024 (+) True LOC118942996
TU1952627 other upstream 457453 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 106234 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 110267 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 199121 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 366649 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 585324 10134388 ~ 10135384 (+) True G1706152

Expression Profile