RNA id: TU1953559


Basic Information

Item Value
RNA id TU1953559
length 221
lncRNA type intronic
GC content 0.52
exon number 1
gene id G1705889
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9562626 ~ 9562846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctcctctcatccctctctctcctctactctccctccatcttcttctctcaCTAGAGgattcctctcatccctctctctcctctactctccctccatcttcttctctcaCTAGAGgattcctctcatccctctctctcctctactctccctccatcttcttctctcaCTAGAGGATTCCTCTCACagctgcagctctctctctcgtgaCTGGCTGTTCAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953556 lncRNA upstream 11835 9550547 ~ 9550791 (+) True G1705886
TU1953555 lncRNA upstream 13562 9548858 ~ 9549064 (+) True G1705885
TU1953554 lncRNA upstream 13959 9548219 ~ 9548667 (+) True G1705884
TU1953548 lncRNA upstream 23176 9539249 ~ 9539450 (+) True G1705880
TU1953547 lncRNA upstream 24975 9536801 ~ 9537651 (+) True G1705879
TU1953562 lncRNA downstream 3758 9566604 ~ 9566829 (+) True G1705892
TU1953563 lncRNA downstream 4985 9567831 ~ 9568124 (+) True G1705893
TU1953566 lncRNA downstream 17573 9580419 ~ 9580681 (+) True G1705896
TU1953567 lncRNA downstream 18178 9581024 ~ 9581244 (+) True G1705897
TU1953569 lncRNA downstream 21654 9584500 ~ 9584718 (+) True G1705899
XM_036956795.1 mRNA upstream 149455 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 149455 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 149455 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 171584 9387717 ~ 9391042 (+) False LOC118943004
XM_036956792.1 mRNA upstream 208154 9336882 ~ 9354472 (+) True LOC110507941
XR_005038495.1 mRNA downstream 206744 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 262004 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 305556 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 417949 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 507630 10070476 ~ 10098024 (+) True LOC118942996
TU1952627 other upstream 471221 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 92452 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 96485 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 185339 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 352867 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 571542 10134388 ~ 10135384 (+) True G1706152

Expression Profile