RNA id: TU1953563


Basic Information

Item Value
RNA id TU1953563
length 294
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1705893
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9567831 ~ 9568124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgaaggggtgtcctcatactgctgtatatatagtggatgaaggggtgtcctgtatatatagtggataaaggggtgtcctcatactgctgtatatatagtggatgaaggggtgtcctcatactgctgtatatttagtggatgaaggggtgtcctcatactgctgtatatatagtggatgaaggggtgtcctcatactgctgtatatatagtggatgaaggggtgtcctcatactgctgtatatatagtggatgaaggggtgtcctcatactgctgtatatatagtgtatgactC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953562 lncRNA upstream 1002 9566604 ~ 9566829 (+) True G1705892
TU1953559 lncRNA upstream 4985 9562626 ~ 9562846 (+) True G1705889
TU1953556 lncRNA upstream 17040 9550547 ~ 9550791 (+) True G1705886
TU1953555 lncRNA upstream 18767 9548858 ~ 9549064 (+) True G1705885
TU1953554 lncRNA upstream 19164 9548219 ~ 9548667 (+) True G1705884
TU1953566 lncRNA downstream 12295 9580419 ~ 9580681 (+) True G1705896
TU1953567 lncRNA downstream 12900 9581024 ~ 9581244 (+) True G1705897
TU1953569 lncRNA downstream 16376 9584500 ~ 9584718 (+) True G1705899
TU1953570 lncRNA downstream 18333 9586457 ~ 9586799 (+) True G1705900
TU1953571 lncRNA downstream 33104 9601228 ~ 9601487 (+) True G1705901
XM_036956795.1 mRNA upstream 154660 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 154660 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 154660 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 176789 9387717 ~ 9391042 (+) False LOC118943004
XM_036956792.1 mRNA upstream 213359 9336882 ~ 9354472 (+) True LOC110507941
XR_005038495.1 mRNA downstream 201466 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 256726 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 300278 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 412671 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 502352 10070476 ~ 10098024 (+) True LOC118942996
TU1952627 other upstream 476426 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 87174 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 91207 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 180061 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 347589 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 566264 10134388 ~ 10135384 (+) True G1706152

Expression Profile