RNA id: TU1953581


Basic Information

Item Value
RNA id TU1953581
length 306
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1705911
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9634547 ~ 9635354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTGACATTCTGAGAGCTCATTGGAGAAATAGGGTTTTTACAGCTCCAGGTCTATTTCTAAATATCTGACTGTATTGATGGGTCTCAGGAGGTTTATGAGAGATGAACTCTGATGTTGTCTGACTGTATTGATGGGTCTCAGGAGGTTTATGAGAGATGAACTCTGATGTTGTCTGACTGTATTGATGGGATGGGTCTCAGGAGGTTTATGAGAGATGAACTCTGATGTTGTCTGACTGTATTGATGGGATGGGTCTCAGGAGGTTTATGAGGGAGGAACTCTGATGTTGTCTGACTGTATTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953578 lncRNA upstream 8559 9625708 ~ 9625988 (+) True G1705908
TU1953577 lncRNA upstream 16813 9617318 ~ 9617734 (+) True G1705907
TU1953571 lncRNA upstream 33060 9601228 ~ 9601487 (+) True G1705901
TU1953570 lncRNA upstream 47748 9586457 ~ 9586799 (+) True G1705900
TU1953569 lncRNA upstream 49829 9584500 ~ 9584718 (+) True G1705899
TU1953584 lncRNA downstream 3335 9638689 ~ 9639293 (+) True G1705913
TU1953588 lncRNA downstream 19021 9654375 ~ 9654612 (+) True G1705917
TU1953590 lncRNA downstream 23538 9658892 ~ 9659171 (+) True G1705919
TU1953593 lncRNA downstream 25157 9660511 ~ 9660789 (+) True G1705921
TU1953594 lncRNA downstream 29705 9665059 ~ 9665338 (+) True G1705922
XM_036956795.1 mRNA upstream 221376 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 221376 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 221376 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 243505 9387717 ~ 9391042 (+) False LOC118943004
XM_036956792.1 mRNA upstream 280075 9336882 ~ 9354472 (+) True LOC110507941
XR_005038495.1 mRNA downstream 134236 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 189496 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 233048 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 345441 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 435122 10070476 ~ 10098024 (+) True LOC118942996
TU1952627 other upstream 543142 9075492 ~ 9091405 (+) False eps8a
TU1953589 other downstream 19944 9655298 ~ 9655718 (+) True G1705918
TU1953592 other downstream 23977 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 112831 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 280359 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 499034 10134388 ~ 10135384 (+) True G1706152

Expression Profile