RNA id: TU1953590


Basic Information

Item Value
RNA id TU1953590
length 280
lncRNA type intronic
GC content 0.32
exon number 1
gene id G1705919
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9658892 ~ 9659171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaaacagacacttcagaacaaacttcctttagatgtaaatacatgtttcctgatctttcttcttctctcagatataaaacagacacttcagaacaaacttcctttagatgtaaatacatgtttcctgatctttcttcttctctcagatataaaacagacacttcagaacaaacttcctttagatgtaaatacatgtttccagatctttcttcttctctcagatataagacagacacttcagaacaaacttcctttagatgtaaatacatgtttagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953588 lncRNA upstream 4280 9654375 ~ 9654612 (+) True G1705917
TU1953584 lncRNA upstream 19599 9638689 ~ 9639293 (+) True G1705913
TU1953581 lncRNA upstream 23538 9634547 ~ 9635354 (+) True G1705911
TU1953578 lncRNA upstream 32904 9625708 ~ 9625988 (+) True G1705908
TU1953577 lncRNA upstream 41158 9617318 ~ 9617734 (+) True G1705907
TU1953593 lncRNA downstream 1340 9660511 ~ 9660789 (+) True G1705921
TU1953594 lncRNA downstream 5888 9665059 ~ 9665338 (+) True G1705922
TU1953725 lncRNA downstream 82727 9741898 ~ 9743489 (+) False G1706009
TU1953728 lncRNA downstream 83045 9742216 ~ 9743489 (+) True G1706009
TU1953732 lncRNA downstream 85504 9744675 ~ 9746142 (+) False G1706010
XM_036956795.1 mRNA upstream 245721 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 245721 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 245721 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 267850 9387717 ~ 9391042 (+) False LOC118943004
XM_036956792.1 mRNA upstream 304420 9336882 ~ 9354472 (+) True LOC110507941
XR_005038495.1 mRNA downstream 110419 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 165679 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 209231 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 321624 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 411305 10070476 ~ 10098024 (+) True LOC118942996
TU1953589 other upstream 3174 9655298 ~ 9655718 (+) True G1705918
TU1952627 other upstream 567487 9075492 ~ 9091405 (+) False eps8a
TU1953592 other downstream 160 9659331 ~ 9660140 (+) True G1705920
TU1953737 other downstream 89014 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 256542 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 475217 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1450257 11109428 ~ 11116425 (+) False LOC110531908

Expression Profile