RNA id: TU1953728


Basic Information

Item Value
RNA id TU1953728
length 1222
lncRNA type antisense_over
GC content 0.53
exon number 3
gene id G1706009
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9741898 ~ 9743489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTACGTTCAGTTATATTTGTGATAAAACACAATATTTTAATATCTGGATCATTCGCCAATATCTCGGTTTTGACAACTTCAAATGCTCCTCTTTAGCTCGCCGTCAAATCCCGATGGTGCCGTCCCTAATGCTGCCATAGCAACCTGGGAACATCTGGTAACTTATCGGTCACGATGTGgttggacagacagagacaggtagacagacagacagacagagacagacacaaacagacagacagagagacagagccaggtagacagacagagagagacaggtagacagacagagacagagacagagacaggtagacagagacagacagggccaggtagacagagacagacagggccaggtagacagacagagacagacagggccaggtagacagacagagacagacatggcCAGGTAGACAGggccaggtagacagacagagacagacagggccagGTAGACAGGGCCAggtagacagatagagacagacagggccaggtagacagacagagacagacagggccagGTAGACAGGGCCAGGTAGACAGGGCCAGGTAGACAGggccaggtagacagacagacacagagagacagagacagagagacagagagacagacagacacagagagacagagacagagagacagacagagaccgacagggccaggtagacagacagacagtgtagcaggATAGTAGTTTGCCTCTATAGACCAACTGAAACAACCCAACCAAGATGGAACACAGGATCATAAAGCCAGCTCACCAGGAAGAACAACATCtcttaatgttttttttgtttgttaattaCATCCGATTTAGTTTAATGTATGTTTCTGTGGGGGATTTAAAGACGGGAATCAGAAGTCCACTTCACAGCATCGCCCCCTAGTGGCGGTCCATGCCGGCGCTCTGTAGCAGCTCTGTGGGTGTCTGAGCCGGGGATCTGAAAGCAGTCTGGAAGCCTGGAGGTGGGGAGTGGAAGTGGCCGACTGGGTGGGGGTTGTGAGAGGCTGTGGATGGGGGTGGGAAGGGGGCCCAGCTGGGTCTGTGGTGAGGACGGACATGGCCGCTGTGAGAGTTGGGCTGCTGGGGGTTCGGGTTCACAGTGGAGCTGGGGATAGACGGAGCATCCATCTCTGTAAGGGCCTGAAGGGACTTGAGCCAGTGGGGAGGGTTGTCATCCTGGGAGTCAAAACTGTTGCCTGCTGACGATGGGAaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953594 lncRNA upstream 76878 9665059 ~ 9665338 (+) True G1705922
TU1953593 lncRNA upstream 81427 9660511 ~ 9660789 (+) True G1705921
TU1953590 lncRNA upstream 83045 9658892 ~ 9659171 (+) True G1705919
TU1953588 lncRNA upstream 87604 9654375 ~ 9654612 (+) True G1705917
TU1953584 lncRNA upstream 102923 9638689 ~ 9639293 (+) True G1705913
TU1953732 lncRNA downstream 1186 9744675 ~ 9746142 (+) False G1706010
TU1953733 lncRNA downstream 1186 9744675 ~ 9746142 (+) True G1706010
TU1953751 lncRNA downstream 25955 9769444 ~ 9771487 (+) True LOC118942867
TU1953760 lncRNA downstream 32261 9775750 ~ 9776626 (+) True G1706027
TU1953768 lncRNA downstream 40834 9784323 ~ 9800209 (+) True G1706031
XM_036956805.1 mRNA upstream 19230 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 329045 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 329045 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 329045 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 351174 9387717 ~ 9391042 (+) False LOC118943004
XR_005038495.1 mRNA downstream 26101 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 81361 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 124913 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 237306 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 326987 10070476 ~ 10098024 (+) True LOC118942996
TU1953592 other upstream 82076 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 86498 9655298 ~ 9655718 (+) True G1705918
TU1952630 other upstream 650811 9075492 ~ 9091405 (+) False eps8a
TU1953737 other downstream 4696 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 172224 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 390899 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1365939 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1527240 11270729 ~ 11272473 (+) True G1706652

Expression Profile