RNA id: TU1953732


Basic Information

Item Value
RNA id TU1953732
length 484
lncRNA type intronic
GC content 0.48
exon number 3
gene id G1706010
representative False

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9744675 ~ 9746142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAGGGAGGattggatggaaggaaggaacagTATCTGACAGTAGGGAGGattggatggaaGGAAGGAACAGTATCTGACAGTGGGGAGGTTtagatggatggaaggagggaacAGTATCTGACAGTAGGGAGGattggatggaaggaaggaacagTATCTGACAGTAGGGAGGATTGGATGGAAGGAGGGAACAGTATCTGACAGTAGGGAGGattggatggaaggaaggaacagTATCTGACAGTAGGGAGGattggatggaaggaaggaacagTATCTGACAGTAGGGAGGattggatggaaggaacagTATCTGACAGTAGGGAGGattggatggaaggaaggagggaacaGTATCTGACAGTGGGGAGGATTAGATGTTTCACAAtctcacacagtctcacacagtcacagtctctcacagtctctcacagtctcacacagtctctcacagtcACTCACAGTCACTCACAGTCACTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953725 lncRNA upstream 1186 9741898 ~ 9743489 (+) False G1706009
TU1953728 lncRNA upstream 1186 9742216 ~ 9743489 (+) True G1706009
TU1953594 lncRNA upstream 79337 9665059 ~ 9665338 (+) True G1705922
TU1953593 lncRNA upstream 83886 9660511 ~ 9660789 (+) True G1705921
TU1953590 lncRNA upstream 85504 9658892 ~ 9659171 (+) True G1705919
TU1953751 lncRNA downstream 23302 9769444 ~ 9771487 (+) True LOC118942867
TU1953760 lncRNA downstream 29608 9775750 ~ 9776626 (+) True G1706027
TU1953768 lncRNA downstream 38181 9784323 ~ 9800209 (+) True G1706031
TU1953794 lncRNA downstream 69066 9815208 ~ 9816642 (+) True G1706051
TU1953796 lncRNA downstream 73749 9819891 ~ 9859095 (+) False G1706053
XM_036956805.1 mRNA upstream 21689 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 331504 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 331504 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 331504 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 353633 9387717 ~ 9391042 (+) False LOC118943004
XR_005038495.1 mRNA downstream 23448 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 78708 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 122260 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 234653 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 324334 10070476 ~ 10098024 (+) True LOC118942996
TU1953592 other upstream 84535 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 88957 9655298 ~ 9655718 (+) True G1705918
TU1952630 other upstream 653270 9075492 ~ 9091405 (+) False eps8a
TU1953737 other downstream 2043 9748185 ~ 9753473 (+) True G1706013
TU1953859 other downstream 169571 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 388246 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1363286 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1524587 11270729 ~ 11272473 (+) True G1706652

Expression Profile