RNA id: TU1953737


Basic Information

Item Value
RNA id TU1953737
length 583
RNA type TUCP
GC content 0.40
exon number 3
gene id G1706013
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9748185 ~ 9753473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctcagtgtctggatgtggtatattcacctcagtgtctggatgtggtatattcatctcagtatctggatgtggtatattcatctcagtgtggtatattcatctcagtgtggtatattcatctcagtgtctggatgtggtatattcacctcagtgtctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtatctggatgtggtatattcatctcagtatctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtggtatattaatctcagtgtctggatgtggtatattcatctcagtgtctggatgtggtatattcatctcagtgtggtaTATTCACCTCAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953732 lncRNA upstream 2043 9744675 ~ 9746142 (+) False G1706010
TU1953733 lncRNA upstream 2043 9744675 ~ 9746142 (+) True G1706010
TU1953725 lncRNA upstream 4696 9741898 ~ 9743489 (+) False G1706009
TU1953728 lncRNA upstream 4696 9742216 ~ 9743489 (+) True G1706009
TU1953594 lncRNA upstream 82847 9665059 ~ 9665338 (+) True G1705922
TU1953751 lncRNA downstream 15971 9769444 ~ 9771487 (+) True LOC118942867
TU1953760 lncRNA downstream 22277 9775750 ~ 9776626 (+) True G1706027
TU1953768 lncRNA downstream 30850 9784323 ~ 9800209 (+) True G1706031
TU1953794 lncRNA downstream 61735 9815208 ~ 9816642 (+) True G1706051
TU1953796 lncRNA downstream 66418 9819891 ~ 9859095 (+) False G1706053
XM_036956805.1 mRNA upstream 25199 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 335014 9402494 ~ 9413171 (+) False LOC118936575
XM_036956796.1 mRNA upstream 335014 9402494 ~ 9413171 (+) False LOC118936575
XM_036956798.1 mRNA upstream 335014 9402502 ~ 9413171 (+) True LOC118936575
XM_036958472.1 mRNA upstream 357143 9387717 ~ 9391042 (+) False LOC118943004
XR_005038495.1 mRNA downstream 16117 9769590 ~ 9770148 (+) False LOC118942867
XM_036956808.1 mRNA downstream 71377 9824850 ~ 9864743 (+) False LOC118942868
XM_021594958.2 mRNA downstream 114929 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 227322 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 317003 10070476 ~ 10098024 (+) True LOC118942996
TU1953592 other upstream 88045 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 92467 9655298 ~ 9655718 (+) True G1705918
TU1952628 other upstream 656780 9075492 ~ 9091405 (+) False eps8a
TU1953859 other downstream 162240 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 380915 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1355955 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1517256 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1644567 11398040 ~ 11399228 (+) False G1706711

Expression Profile