RNA id: TU1953796



Basic Information


Item Value
RNA id TU1953796
length 310
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G1706053
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9819891 ~ 9859774 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGTAGATGAGactactacagcttattgaggtagatgagactactacagcttattgaggtagatgagactactacagcttattgaggtagatgagactactacaccttattgaggtagatgagactactacaccttattgaggtagatgagactactacaccttattgaggtagatgagactactacagcttattgaggtagatgagactactacagcttattgaggtagatgagactactacagcttattgaggtagatgagactactacagcttattgaggtagatgagactactacagcttattgag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1953794 lncRNA upstream 3249 9815208 ~ 9816642 (+) True G1706051
TU1953768 lncRNA upstream 19682 9784323 ~ 9800209 (+) True G1706031
TU1953760 lncRNA upstream 43265 9775750 ~ 9776626 (+) True G1706027
TU1953751 lncRNA upstream 48404 9769444 ~ 9771487 (+) True LOC118942867
TU1953732 lncRNA upstream 73749 9744675 ~ 9746142 (+) False G1706010
TU1953848 lncRNA downstream 28757 9887852 ~ 9888872 (+) True G1706082
TU1953855 lncRNA downstream 37253 9896348 ~ 9896604 (+) True G1706086
TU1953856 lncRNA downstream 47772 9906867 ~ 9907072 (+) True G1706087
TU1953864 lncRNA downstream 68251 9927346 ~ 9927550 (+) True G1706095
TU1953865 lncRNA downstream 71729 9930824 ~ 9931079 (+) True G1706096
XR_005038495.1 mRNA upstream 49743 9769590 ~ 9770148 (+) False LOC118942867
XM_036956805.1 mRNA upstream 96905 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 406720 9402494 ~ 9413171 (+) False LOC118936575
XM_021594958.2 mRNA downstream 9307 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 121700 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 211381 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 462097 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 663851 10522946 ~ 10698614 (+) False LOC110490805
TU1953737 other upstream 66418 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 159751 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 164173 9655298 ~ 9655718 (+) True G1705918
TU1952632 other upstream 728486 9075492 ~ 9091405 (+) False eps8a
TU1953859 other downstream 56618 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 275293 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1250333 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1411634 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1538945 11398040 ~ 11399228 (+) False G1706711

Expression Profile