RNA id: TU1953823



Basic Information


Item Value
RNA id TU1953823
length 265
lncRNA type intronic
GC content 0.34
exon number 2
gene id G1706069
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9856620 ~ 9857023 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggtctccatgttttatatactacggtctccatgttttatatactacggtctccatgttttactgtcagatactgtatttatatactatggtctccatgttttactgtcagatactgtatttatatactacggtctccatgttttactgtcagatactgtatttatatactacggtctccatgttttatatactacggtctccatgttttatatactacggtctccatgttttactgtcagatactgtatttatatactacggtct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1953812 lncRNA upstream 20825 9835259 ~ 9835795 (+) True G1706062
TU1953806 lncRNA upstream 30468 9824762 ~ 9826152 (+) True LOC118942868
TU1953794 lncRNA upstream 39978 9815208 ~ 9816642 (+) True G1706051
TU1953768 lncRNA upstream 56411 9784323 ~ 9800209 (+) True G1706031
TU1953760 lncRNA upstream 79994 9775750 ~ 9776626 (+) True G1706027
TU1953797 lncRNA downstream 1659 9858682 ~ 9859774 (+) True G1706053
TU1953848 lncRNA downstream 30829 9887852 ~ 9888872 (+) True G1706082
TU1953855 lncRNA downstream 39325 9896348 ~ 9896604 (+) True G1706086
TU1953856 lncRNA downstream 49844 9906867 ~ 9907072 (+) True G1706087
TU1953864 lncRNA downstream 70323 9927346 ~ 9927550 (+) True G1706095
XR_005038495.1 mRNA upstream 86472 9769590 ~ 9770148 (+) False LOC118942867
XM_036956805.1 mRNA upstream 133634 9532104 ~ 9722986 (+) True LOC118942866
XM_036956795.1 mRNA upstream 443449 9402494 ~ 9413171 (+) False LOC118936575
XM_021594958.2 mRNA downstream 11379 9868402 ~ 9870589 (+) True LOC110516560
XR_005038521.1 mRNA downstream 123772 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 213453 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 464169 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 665923 10522946 ~ 10698614 (+) False LOC110490805
TU1953737 other upstream 103147 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 196480 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 200902 9655298 ~ 9655718 (+) True G1705918
TU1952632 other upstream 765215 9075492 ~ 9091405 (+) False eps8a
TU1953859 other downstream 58690 9915713 ~ 9918019 (+) True G1706090
TU1953937 other downstream 277365 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1252405 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1413706 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1541017 11398040 ~ 11399228 (+) False G1706711

Expression Profile