RNA id: TU1953864


Basic Information

Item Value
RNA id TU1953864
length 205
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1706095
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9927346 ~ 9927550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataacagcctccactcttctgggaaggctttccactagatgttggaacattgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattgctgctaaaACACCATTCCAGCAGACGGtttgcattgcgcatggtgatcttaggttggtgtgcggctgctcggccatggaaacccatttcatgaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953856 lncRNA upstream 20274 9906867 ~ 9907072 (+) True G1706087
TU1953855 lncRNA upstream 30742 9896348 ~ 9896604 (+) True G1706086
TU1953848 lncRNA upstream 38474 9887852 ~ 9888872 (+) True G1706082
TU1953797 lncRNA upstream 67572 9858682 ~ 9859774 (+) True G1706053
TU1953819 lncRNA upstream 69704 9850537 ~ 9857642 (+) True G1706065
TU1953865 lncRNA downstream 3274 9930824 ~ 9931079 (+) True G1706096
TU1953873 lncRNA downstream 17437 9944987 ~ 9945244 (+) True G1706103
TU1953875 lncRNA downstream 29065 9956615 ~ 9957061 (+) True G1706105
TU1953877 lncRNA downstream 29559 9957109 ~ 9957879 (+) False G1706106
TU1953878 lncRNA downstream 29559 9957109 ~ 9957879 (+) True G1706106
XM_021594958.2 mRNA upstream 56757 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 62603 9824850 ~ 9864743 (+) False LOC118942868
XR_005038495.1 mRNA upstream 157198 9769590 ~ 9770148 (+) False LOC118942867
XM_036956805.1 mRNA upstream 204360 9532104 ~ 9722986 (+) True LOC118942866
XM_036956798.1 mRNA upstream 514175 9402502 ~ 9413171 (+) True LOC118936575
XR_005038521.1 mRNA downstream 53245 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 142926 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 393642 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 595396 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 595396 10522946 ~ 10698614 (+) False LOC110490805
TU1953859 other upstream 9327 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 173873 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 267206 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 271628 9655298 ~ 9655718 (+) True G1705918
TU1952632 other upstream 835941 9075492 ~ 9091405 (+) False eps8a
TU1953937 other downstream 206838 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1181878 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1343179 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1470490 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 1470490 11398040 ~ 11399228 (+) False G1706711

Expression Profile