RNA id: TU1953875


Basic Information

Item Value
RNA id TU1953875
length 447
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G1706105
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 9956615 ~ 9957061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGACAAGCATGAAGtgttaataatattataatatactgtatattaccatagaGACAAGCATGTTACTAATATTATAATATACCGTATATTACCATAGAGACAAGCATGATATGTTACTAATATTTCAGCTCTTAAATGTAAATAGACAGTAAAAATCATGATTTAACAttcagatgacatggtgttgtgCTGCCAAAATATCCCAGGGGACAGTTTTGATTCCCAATCTAGTAATACAGTATTTTCCTGCTgagcttttgctctgacatataaATGACAACATTCTATTCAGGACAAAACATTCATTTATTTCAGAGTCAAATCTCACATTTTCCATCTGCTGGAGCTTCTATCGTGAAGGTGTTTCAAAGTGTCTTTGGCATCAGTGTTAAAATCTTCACATTTCATATCATCTAActacctcccatctctcctcataTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953873 lncRNA upstream 11371 9944987 ~ 9945244 (+) True G1706103
TU1953865 lncRNA upstream 25536 9930824 ~ 9931079 (+) True G1706096
TU1953864 lncRNA upstream 29065 9927346 ~ 9927550 (+) True G1706095
TU1953856 lncRNA upstream 49543 9906867 ~ 9907072 (+) True G1706087
TU1953855 lncRNA upstream 60011 9896348 ~ 9896604 (+) True G1706086
TU1953877 lncRNA downstream 48 9957109 ~ 9957879 (+) False G1706106
TU1953878 lncRNA downstream 48 9957109 ~ 9957879 (+) True G1706106
TU1953880 lncRNA downstream 2513 9959574 ~ 9963195 (+) True G1706108
TU1953897 lncRNA downstream 52029 10009090 ~ 10009474 (+) True G1706122
TU1953917 lncRNA downstream 111069 10068130 ~ 10068706 (+) True G1706136
XM_021594958.2 mRNA upstream 86026 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 91872 9824850 ~ 9864743 (+) False LOC118942868
XR_005038495.1 mRNA upstream 186467 9769590 ~ 9770148 (+) False LOC118942867
XM_036956805.1 mRNA upstream 233629 9532104 ~ 9722986 (+) True LOC118942866
XM_036956798.1 mRNA upstream 543444 9402502 ~ 9413171 (+) True LOC118936575
XR_005038521.1 mRNA downstream 23734 9980795 ~ 9981137 (+) True LOC118942870
XM_036958460.1 mRNA downstream 113415 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 364131 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 565885 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 565885 10522946 ~ 10698614 (+) False LOC110490805
TU1953859 other upstream 38596 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 203142 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 296475 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 300897 9655298 ~ 9655718 (+) True G1705918
TU1952635 other upstream 865210 9078028 ~ 9091405 (+) True eps8a
TU1953937 other downstream 177327 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1152367 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1313668 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1440979 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 1440979 11398040 ~ 11399228 (+) False G1706711

Expression Profile