RNA id: TU1953917


Basic Information

Item Value
RNA id TU1953917
length 244
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1706136
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10068130 ~ 10068706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACGGttactgttgtcatggaaccatGCTGCCTGTCTGTAAGTCTAATGACATATTATGGGATCAGTACGGttactgttgtcatggaaccatACTGCCTGTCTGTAAGTCTATTGACATATTATGGGATCAGTACGGttactgttgtcatggaaccatACTGCCTGTCTGTAAGTCTATTGACATATTATGGGATCAGTACGGTTACTGTCGTCATGGAACCATACTGCCTGTCTGTAAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953897 lncRNA upstream 58656 10009090 ~ 10009474 (+) True G1706122
TU1953880 lncRNA upstream 104935 9959574 ~ 9963195 (+) True G1706108
TU1953877 lncRNA upstream 110251 9957109 ~ 9957879 (+) False G1706106
TU1953878 lncRNA upstream 110251 9957109 ~ 9957879 (+) True G1706106
TU1953875 lncRNA upstream 111069 9956615 ~ 9957061 (+) True G1706105
TU1953922 lncRNA downstream 19604 10088310 ~ 10126777 (+) False G1706139
TU1953927 lncRNA downstream 33495 10102201 ~ 10104396 (+) False G1706143
TU1953928 lncRNA downstream 33495 10102201 ~ 10104396 (+) True G1706143
TU1953936 lncRNA downstream 52544 10121250 ~ 10121559 (+) True G1706151
TU1953921 lncRNA downstream 57809 10126515 ~ 10126777 (+) True G1706139
XR_005038521.1 mRNA upstream 86993 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 197541 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 203387 9824850 ~ 9864743 (+) False LOC118942868
XR_005038495.1 mRNA upstream 297982 9769590 ~ 9770148 (+) False LOC118942867
XM_036956805.1 mRNA upstream 345144 9532104 ~ 9722986 (+) True LOC118942866
XM_036958460.1 mRNA downstream 1770 10070476 ~ 10098024 (+) True LOC118942996
XM_021591905.2 mRNA downstream 252486 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 454240 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 454240 10522946 ~ 10698614 (+) False LOC110490805
XM_036956824.1 mRNA downstream 454240 10522946 ~ 10698614 (+) False LOC110490805
TU1953859 other upstream 150111 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 314657 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 407990 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 412412 9655298 ~ 9655718 (+) True G1705918
TU1952635 other upstream 976725 9078028 ~ 9091405 (+) True eps8a
TU1953937 other downstream 65682 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 1040722 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1202023 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1329334 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 1329334 11398040 ~ 11399228 (+) False G1706711

Expression Profile