RNA id: TU1953921


Basic Information

Item Value
RNA id TU1953921
length 243
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1706139
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10088310 ~ 10126777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtctgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1953936 lncRNA upstream 4956 10121250 ~ 10121559 (+) True G1706151
TU1953927 lncRNA upstream 22119 10102201 ~ 10104396 (+) False G1706143
TU1953928 lncRNA upstream 22119 10102201 ~ 10104396 (+) True G1706143
TU1953917 lncRNA upstream 57809 10068130 ~ 10068706 (+) True G1706136
TU1953897 lncRNA upstream 117041 10009090 ~ 10009474 (+) True G1706122
TU1953990 lncRNA downstream 104571 10231348 ~ 10232855 (+) True G1706198
TU1954018 lncRNA downstream 164326 10291103 ~ 10292017 (+) True G1706224
TU1954058 lncRNA downstream 260313 10387090 ~ 10387614 (+) True G1706252
TU1954103 lncRNA downstream 279297 10406074 ~ 10407348 (+) False G1706261
TU1954069 lncRNA downstream 279415 10406192 ~ 10407348 (+) False G1706261
XM_036958460.1 mRNA upstream 28491 10070476 ~ 10098024 (+) True LOC118942996
XR_005038521.1 mRNA upstream 145378 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 255926 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 261772 9824850 ~ 9864743 (+) False LOC118942868
XR_005038495.1 mRNA upstream 356367 9769590 ~ 9770148 (+) False LOC118942867
XM_021591905.2 mRNA downstream 194415 10321192 ~ 10323104 (+) True LOC110510583
XM_036956822.1 mRNA downstream 396169 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 396169 10522946 ~ 10698614 (+) False LOC110490805
XM_036956824.1 mRNA downstream 396169 10522946 ~ 10698614 (+) False LOC110490805
XM_036956825.1 mRNA downstream 396169 10522946 ~ 10698614 (+) False LOC110490805
TU1953859 other upstream 208496 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 373042 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 466375 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 470797 9655298 ~ 9655718 (+) True G1705918
TU1952635 other upstream 1035110 9078028 ~ 9091405 (+) True eps8a
TU1953937 other downstream 7611 10134388 ~ 10135384 (+) True G1706152
TU1954537 other downstream 982651 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 1143952 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1271263 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 1271263 11398040 ~ 11399228 (+) False G1706711

Expression Profile