RNA id: TU1955076



Basic Information


Item Value
RNA id TU1955076
length 919
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1706985
representative True

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10349660 ~ 10350788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCGTGTGCTTAAGCCTGTACATGCCCACATACGTGTGTGTCTATATAGATGGGGGTTTGTTCAGAGCACAGGCCATCTGGTGATAGACTAGAACATCCCTCATGGCTTCAGGCCTTCCTCTGAGACCTActgtcaatagactgagatagacctactgtcaatagactgagatacacctactgagacctactgtcaatagactgagatagacctactgagacctactgtcaatagactgagatacacctactgagacctactgtcaatagactgagataggtctgctgagacctactgtcaatagactgagatacacctactgagacctactgtcaatagactgagatagacttactgagacctactgtcaatagactgagatagacctactgagacctactgtcaatagactgagatagctctgctgagacctactgtcaatagactgagatacacctactgagacctactgtcaatagactgagatagctctgctgagacctactgtcaatAGATTTGAGATAGAcctactgagacctactgtcaatagactgagatacaCCTACTGACACCTActgtcaatagactgagatagctctgctgagacctactgtcaatagactgagatagacctactgtcaatagactgagatagacctactgtcaatagactgagatagacctactgtcaatagactgagatagatctactgtcaatagactgagatatacctactgtcaatagactgagatagatctgctgagacctactgtcaatagactgagatagacctactgagacctactgtcaatagactgagatagacctactgagacctactgtcaatagactgagatagctctgctgagacctactgtcaatagactgagatagacctactgtcaatagactgagat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1955071 lncRNA downstream 8528 10340702 ~ 10341132 (-) True G1706981
TU1955070 lncRNA downstream 10708 10338466 ~ 10338952 (-) True G1706980
TU1955062 lncRNA downstream 14503 10334796 ~ 10335157 (-) True G1706975
TU1955058 lncRNA downstream 32501 10316682 ~ 10317159 (-) True G1706971
TU1955054 lncRNA downstream 48795 10299158 ~ 10300865 (-) True G1706968
TU1955089 lncRNA upstream 18379 10369167 ~ 10370182 (-) True G1706994
TU1955094 lncRNA upstream 33953 10384741 ~ 10385158 (-) True G1706999
TU1954746 lncRNA upstream 55492 10406280 ~ 10407509 (-) False LOC118942872
TU1955104 lncRNA upstream 57280 10408068 ~ 10408488 (-) True G1707009
TU1955105 lncRNA upstream 57704 10408492 ~ 10409335 (-) True G1707010
XR_005038522.1 mRNA downstream 220407 10128070 ~ 10129253 (-) True LOC118942871
XR_005038513.1 mRNA downstream 288508 9957157 ~ 10061152 (-) False LOC118942869
XM_036958461.1 mRNA upstream 34694 10385482 ~ 10387576 (-) True LOC118942997
XM_036956821.1 mRNA upstream 55390 10406178 ~ 10491072 (-) False LOC118942872
XM_036956844.1 mRNA upstream 445769 10796557 ~ 10897354 (-) False LOC110499727
XM_036956840.1 mRNA upstream 445769 10796557 ~ 10897355 (-) False LOC110499727
XM_036956841.1 mRNA upstream 445769 10796557 ~ 10897355 (-) False LOC110499727
TU1953656 other downstream 706719 9641950 ~ 9642941 (-) True G1705975
TU1953431 other downstream 875306 9468623 ~ 9474354 (-) True LOC110515809
TU1953378 other downstream 1072586 9274597 ~ 9277074 (-) True LOC118942865
TU1953186 other downstream 1246505 9102418 ~ 9103155 (-) True LOC118942864
TU1953016 other downstream 1540736 8806909 ~ 8808924 (-) True LOC118942856
TU1955083 other upstream 9636 10360424 ~ 10360975 (-) True G1706990
TU1955088 other upstream 17096 10367884 ~ 10368439 (-) True G1706993
TU1955159 other upstream 179829 10530617 ~ 10531271 (-) True G1707057
TU1955302 other upstream 470136 10820924 ~ 10897321 (-) True LOC110499727
TU1955400 other upstream 614047 10964835 ~ 10997654 (-) False LOC110518048

Expression Profile