RNA id: TU1954058


Basic Information

Item Value
RNA id TU1954058
length 503
lncRNA type read_through
GC content 0.41
exon number 2
gene id G1706252
representative True

Chromosome Information

Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10387090 ~ 10387614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCTCTATATAACCACTAGAGGGTATATCAACCTTCTGACAGTCTAGAATCTCTATATAACCACTAGAGGGTATGTCAACCTTCTGACAGTCTAGAATCTCTATATAACCACTAGAGGGTATATCAACCTTCTGACAGTCTAGAATCTCTATATAACCACTAGAATGTATATCAACCTTCTGACAGTCTAGAATCTCTATATAACCACTAGAATGTATATCAACCTTCTCCAGCTGAATGAAGTGTTACCACAATTAGTGTAACACCAATAAGTGATAAATACAAAATACAGTAGCCATGGTTCCCATATACATAGCCATGGTTCCCAAATACAGTAGCCATGGTTCCCAAATACAGTAGCCATGGTTCCCAAATACAGTAGCCATGGTTCCCAAATACAGTAGCCATGGTTCCCAAATACAGTAGCCATGGTTCccacccaggtggtgaaggtaggaaacatcaccaccactctgctgatcctcaacactgtggccccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1954018 lncRNA upstream 95073 10291103 ~ 10292017 (+) True G1706224
TU1953990 lncRNA upstream 154235 10231348 ~ 10232855 (+) True G1706198
TU1953921 lncRNA upstream 260313 10126515 ~ 10126777 (+) True G1706139
TU1953936 lncRNA upstream 265531 10121250 ~ 10121559 (+) True G1706151
TU1953927 lncRNA upstream 282694 10102201 ~ 10104396 (+) False G1706143
TU1954103 lncRNA downstream 18460 10406074 ~ 10407348 (+) False G1706261
TU1954069 lncRNA downstream 18578 10406192 ~ 10407348 (+) False G1706261
TU1954070 lncRNA downstream 18578 10406192 ~ 10407348 (+) False G1706261
TU1954072 lncRNA downstream 18578 10406192 ~ 10407348 (+) False G1706261
TU1954074 lncRNA downstream 18578 10406192 ~ 10407348 (+) False G1706261
XM_021591905.2 mRNA upstream 63986 10321192 ~ 10323104 (+) True LOC110510583
XM_036958460.1 mRNA upstream 289066 10070476 ~ 10098024 (+) True LOC118942996
XR_005038521.1 mRNA upstream 405953 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 516501 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 522347 9824850 ~ 9864743 (+) False LOC118942868
XM_036956822.1 mRNA downstream 135332 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 135332 10522946 ~ 10698614 (+) False LOC110490805
XM_036956824.1 mRNA downstream 135332 10522946 ~ 10698614 (+) False LOC110490805
XM_036956825.1 mRNA downstream 135332 10522946 ~ 10698614 (+) False LOC110490805
XM_036956826.1 mRNA downstream 135332 10522946 ~ 10698614 (+) False LOC110490805
TU1953937 other upstream 251706 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 469071 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 633617 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 726950 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 731372 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 721814 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 883115 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 1010426 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 1010426 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 1010426 11398040 ~ 11399288 (+) False G1706711

Expression Profile