RNA id: TU1954070



Basic Information


Item Value
RNA id TU1954070
length 1095
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G1706261
representative False

Chromosome Information


Item Value
chromosome id NC_048585.1
NCBI id CM023239.2
chromosome length 64935962
location 10406074 ~ 10407348 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTATTGCATTAGAGACACACTTTGGACACAGTGagtatcattattttattagtaAAATGAAGACCACTAGTAGTCACTGTTTCCCCTTATATTATCTGAAGACCCTATGGTCTGTAGCCATTCTTGGAAATCCCAGACCAAGGACATGCTTGAACATTGTTAAATTGTGGGAGGCAACCCGTTTGTCTAGAGAGACTAATCTGTAGCCCAAACACTTGTCTTTAATTTGATTTCTGAGCCATACACATTAGAATAAGACAATTCTAGTTTTTGACATTTAAATGATTAATGATTTCTTTTACAAATCTCTTCTGATAAAAAAAAGTTACAATAGTAAACCCGTAGTGCCGCGTTTTGAAAGATATATCGCTGAAGTATATCACTCTAGCTTTTAGGGTACAGGTCAGTCTACTGTCTAGGTTGTGGGGTACAGGTCAGTTTTCAGTCTAGGTTTTAGGGTACAGGTCAGTCTTCTGTCTAGGTTGTGGGGTACAGGCCAGTCTTCTGTCTAGGTTTTGGGGTACAGGCCAGTCTTCTGTCTAGGTTTTGGGGTACAGGTCAGTCTACTGTCTAGGTTTTGGGGTACAGATCAGTCTACTGTCTAGGTTTTGGGGTACAGGTCAGTCTACTGTCTAGGTTTTGGGGTACAGATCAGTCTTCAGTCTAGGTTTTGGGGTACAGGTCAGTCTTCAGCCTAGGTGTTGGGGTACAGGTCAGTCTACTGTCTAGGTTTTGGGGTACAGGTCAGTCTACTGTCTAGGTTTAGGGGTACAGGTCAGTCTACTGTCTAGGTTTTGGGGTACAGGCCAGTCTACTGTCTAGGTTTTGGGGTACAGGCCAGTCTACTGTCTAGGTTTTGGGGTACAGGTCAGTCTTCTGTCTAGGTTGTGGGGTACAGGTCAGTCTACTGTCTAGGTTTTGGGGTACAGGCCAGTCTTCAGCCTAGGTTTTGGGGTACAGGCCAGTCTTCTGCACTCCAAATGCGGTGATGAAGATGTTGATGATGGCGGTGATGAAGACGAGGCCGGTGGCCACGTTGTTCATGATGTCCAGCTTCCTCTGGTTGGCCACGTTGTTCAGGTCCTTACGTGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1954058 lncRNA upstream 18578 10387090 ~ 10387614 (+) True G1706252
TU1954018 lncRNA upstream 114175 10291103 ~ 10292017 (+) True G1706224
TU1953990 lncRNA upstream 173337 10231348 ~ 10232855 (+) True G1706198
TU1953921 lncRNA upstream 279415 10126515 ~ 10126777 (+) True G1706139
TU1953936 lncRNA upstream 284633 10121250 ~ 10121559 (+) True G1706151
TU1954147 lncRNA downstream 40153 10447501 ~ 10450684 (+) True G1706277
TU1954151 lncRNA downstream 43512 10450860 ~ 10458562 (+) False G1706278
TU1954150 lncRNA downstream 50718 10458066 ~ 10458562 (+) True G1706278
TU1954177 lncRNA downstream 108533 10515881 ~ 10517090 (+) True G1706302
TU1954235 lncRNA downstream 178301 10585649 ~ 10587832 (+) True G1706346
XM_021591905.2 mRNA upstream 83088 10321192 ~ 10323104 (+) True LOC110510583
XM_036958460.1 mRNA upstream 308168 10070476 ~ 10098024 (+) True LOC118942996
XR_005038521.1 mRNA upstream 425055 9980795 ~ 9981137 (+) True LOC118942870
XM_021594958.2 mRNA upstream 535603 9868402 ~ 9870589 (+) True LOC110516560
XM_036956808.1 mRNA upstream 541449 9824850 ~ 9864743 (+) False LOC118942868
XM_036956822.1 mRNA downstream 115598 10522946 ~ 10698614 (+) False LOC110490805
XM_036956823.1 mRNA downstream 115598 10522946 ~ 10698614 (+) False LOC110490805
XM_036956824.1 mRNA downstream 115598 10522946 ~ 10698614 (+) False LOC110490805
XM_036956825.1 mRNA downstream 115598 10522946 ~ 10698614 (+) False LOC110490805
XM_036956826.1 mRNA downstream 115598 10522946 ~ 10698614 (+) False LOC110490805
TU1953937 other upstream 270808 10134388 ~ 10135384 (+) True G1706152
TU1953859 other upstream 488173 9915713 ~ 9918019 (+) True G1706090
TU1953737 other upstream 652719 9748185 ~ 9753473 (+) True G1706013
TU1953592 other upstream 746052 9659331 ~ 9660140 (+) True G1705920
TU1953589 other upstream 750474 9655298 ~ 9655718 (+) True G1705918
TU1954537 other downstream 702080 11109428 ~ 11116425 (+) False LOC110531908
TU1954621 other downstream 863381 11270729 ~ 11272473 (+) True G1706652
TU1954697 other downstream 990692 11398040 ~ 11399228 (+) False G1706711
TU1954698 other downstream 990692 11398040 ~ 11399228 (+) False G1706711
TU1954699 other downstream 990692 11398040 ~ 11399288 (+) False G1706711

Expression Profile